RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SEC24BO95487 1268 aa14.38□□□□□ -0.11
USP4-205ENST00000431357 U2SURPO15042 1029 aaKnown RBP14.37□□□□□ -0.11
USP4-205ENST00000431357 DDX19BQ9UMR2 479 aa14.37□□□□□ -0.11
USP4-205ENST00000431357 RICTORQ6R327 1708 aa14.37□□□□□ -0.11
USP4-205ENST00000431357 TMEM131LA2VDJ0 1609 aa14.37□□□□□ -0.11
USP4-205ENST00000431357 HDGFL2Q7Z4V5 671 aaPredicted RBP14.36□□□□□ -0.11
USP4-205ENST00000431357 SMC4Q9NTJ3 1288 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 YTHDC2Q9H6S0 1430 aaKnown RBP14.36□□□□□ -0.11
USP4-205ENST00000431357 FYB1O15117 783 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 EXOSC9Q06265 439 aaKnown RBP14.36□□□□□ -0.11
USP4-205ENST00000431357 HDAC1Q13547 482 aaPredicted RBP14.36□□□□□ -0.11
USP4-205ENST00000431357 TBC1D32Q96NH3 1257 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 GGNBP2Q9H3C7 697 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 POGKQ9P215 609 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 STK26Q9P289 416 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 TRIM35Q9UPQ4 493 aa14.36□□□□□ -0.11
USP4-205ENST00000431357 PREX1Q8TCU6 1659 aa14.35□□□□□ -0.11
USP4-205ENST00000431357 FRAT2O75474 233 aaPredicted RBP14.35□□□□□ -0.11
USP4-205ENST00000431357 SAFB2Q14151 953 aaKnown RBP eCLIP14.35□□□□□ -0.11
USP4-205ENST00000431357 PNPLA6Q8IY17 1366 aa14.35□□□□□ -0.11
USP4-205ENST00000431357 DIAPH1O60610 1272 aaKnown RBP14.35□□□□□ -0.11
USP4-205ENST00000431357 CD163L1Q9NR16 1453 aa14.34□□□□□ -0.11
USP4-205ENST00000431357 ATF7IPQ6VMQ6 1270 aa14.34□□□□□ -0.11
USP4-205ENST00000431357 PRAM1Q96QH2 718 aa14.34□□□□□ -0.11
USP4-205ENST00000431357 IPO8O15397 1037 aaKnown RBP14.33□□□□□ -0.11
USP4-205ENST00000431357 TSR2Q969E8 191 aaKnown RBP14.33□□□□□ -0.11
USP4-205ENST00000431357 KIF16BQ96L93 1317 aa14.33□□□□□ -0.12
USP4-205ENST00000431357 SSH1Q8WYL5 1049 aa14.33□□□□□ -0.12
USP4-205ENST00000431357 MINK1Q8N4C8 1332 aaPredicted RBP14.32□□□□□ -0.12
USP4-205ENST00000431357 TRIM27P14373 513 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 RIPK4P57078 832 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 ALDH1L2Q3SY69 923 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 ZNF428Q96B54 188 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 CDC42BPGQ6DT37 1551 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 FCHSD2O94868 740 aa14.32□□□□□ -0.12
USP4-205ENST00000431357 MYO5BQ9ULV0 1848 aa14.31□□□□□ -0.12
USP4-205ENST00000431357 IL27Q8NEV9 243 aa14.31□□□□□ -0.12
USP4-205ENST00000431357 YEATS2Q9ULM3 1422 aa14.31□□□□□ -0.12
USP4-205ENST00000431357 ARHGEF40Q8TER5 1519 aa14.31□□□□□ -0.12
USP4-205ENST00000431357 ALKQ9UM73 1620 aa14.31□□□□□ -0.12
USP4-205ENST00000431357 CDK19Q9BWU1 502 aa14.3□□□□□ -0.12
USP4-205ENST00000431357 ITPRIPQ8IWB1 547 aa14.3□□□□□ -0.12
USP4-205ENST00000431357 SMC5Q8IY18 1101 aa14.3□□□□□ -0.12
USP4-205ENST00000431357 NOB1Q9ULX3 412 aaKnown RBP14.3□□□□□ -0.12
USP4-205ENST00000431357 DLC1Q96QB1 1528 aa14.3□□□□□ -0.12
USP4-205ENST00000431357 KIF20BQ96Q89 1820 aa14.29□□□□□ -0.12
USP4-205ENST00000431357 BRPF1P55201 1214 aaPredicted RBP14.29□□□□□ -0.12
USP4-205ENST00000431357 PPP6R1Q9UPN7 881 aa14.29□□□□□ -0.12
USP4-205ENST00000431357 CHMP4BQ9H444 224 aaKnown RBP14.29□□□□□ -0.12
USP4-205ENST00000431357 ANTXR1Q9H6X2 564 aa14.29□□□□□ -0.12
USP4-205ENST00000431357 CALD1Q05682 793 aaKnown RBP14.28□□□□□ -0.12
USP4-205ENST00000431357 ATP7BP35670 1465 aa14.28□□□□□ -0.12
USP4-205ENST00000431357 PPIP5K1Q6PFW1 1433 aa14.27□□□□□ -0.12
USP4-205ENST00000431357 TBC1D2Q9BYX2 928 aa14.27□□□□□ -0.12
USP4-205ENST00000431357 ZBTB40Q9NUA8 1239 aa14.27□□□□□ -0.12
USP4-205ENST00000431357 GLIPR1L2Q4G1C9 344 aa14.27□□□□□ -0.13
USP4-205ENST00000431357 CABP1Q9NZU7 370 aa14.27□□□□□ -0.13
USP4-205ENST00000431357 FAM135BQ49AJ0 1406 aa14.26□□□□□ -0.13
USP4-205ENST00000431357 TMEM57Q8N5G2 664 aa14.26□□□□□ -0.13
USP4-205ENST00000431357 C22orf23Q9BZE7 217 aa14.26□□□□□ -0.13
USP4-205ENST00000431357 SLKQ9H2G2 1235 aaPredicted RBP14.26□□□□□ -0.13
USP4-205ENST00000431357 STAG3Q9UJ98 1225 aa14.26□□□□□ -0.13
USP4-205ENST00000431357 RSPH6AQ9H0K4 717 aa14.25□□□□□ -0.13
USP4-205ENST00000431357 LRRC7Q96NW7 1537 aa14.24□□□□□ -0.13
USP4-205ENST00000431357 ARHGAP45Q92619 1136 aa14.24□□□□□ -0.13
USP4-205ENST00000431357 PODXL2Q9NZ53 605 aa14.24□□□□□ -0.13
USP4-205ENST00000431357 REREQ9P2R6 1566 aa14.24□□□□□ -0.13
USP4-205ENST00000431357 PRKAR2BP31323 418 aa14.23□□□□□ -0.13
USP4-205ENST00000431357 NUCB1Q02818 461 aa14.23□□□□□ -0.13
USP4-205ENST00000431357 NFE2L2Q16236 605 aa14.23□□□□□ -0.13
USP4-205ENST00000431357 FBXO31Q5XUX0 539 aaPredicted RBP14.23□□□□□ -0.13
USP4-205ENST00000431357 POLKQ9UBT6 870 aa14.23□□□□□ -0.13
USP4-205ENST00000431357 BRPF3Q9ULD4 1205 aa14.23□□□□□ -0.13
USP4-205ENST00000431357 AGLP35573 1532 aa14.22□□□□□ -0.13
USP4-205ENST00000431357 MFAP1P55081 439 aaKnown RBP14.21□□□□□ -0.13
USP4-205ENST00000431357 GNAI1P63096 354 aa14.21□□□□□ -0.13
USP4-205ENST00000431357 PIK3R4Q99570 1358 aa14.21□□□□□ -0.13
USP4-205ENST00000431357 IFT57Q9NWB7 429 aa14.21□□□□□ -0.13
USP4-205ENST00000431357 CHMP5Q9NZZ3 219 aa14.21□□□□□ -0.13
USP4-205ENST00000431357 EDC4Q6P2E9 1401 aaKnown RBP14.2□□□□□ -0.14
USP4-205ENST00000431357 AATKQ6ZMQ8 1374 aa14.2□□□□□ -0.14
USP4-205ENST00000431357 L1TD1Q5T7N2 865 aaKnown RBP14.2□□□□□ -0.14
USP4-205ENST00000431357 GCC1Q96CN9 775 aa14.2□□□□□ -0.14
USP4-205ENST00000431357 A2ML1A8K2U0 1454 aa14.2□□□□□ -0.14
USP4-205ENST00000431357 LMOD3Q0VAK6 560 aa14.2□□□□□ -0.14
USP4-205ENST00000431357 CPSF1Q10570 1443 aaKnown RBP14.19□□□□□ -0.14
USP4-205ENST00000431357 PTCH1Q13635 1447 aa14.19□□□□□ -0.14
USP4-205ENST00000431357 RIMS2Q9UQ26 1411 aa14.19□□□□□ -0.14
USP4-205ENST00000431357 SPATA31D1Q6ZQQ2 1576 aa14.19□□□□□ -0.14
USP4-205ENST00000431357 CDK12Q9NYV4 1490 aaPredicted RBP14.19□□□□□ -0.14
USP4-205ENST00000431357 VAMP4O75379 141 aa14.19□□□□□ -0.14
USP4-205ENST00000431357 CHD1LQ86WJ1 897 aa14.19□□□□□ -0.14
USP4-205ENST00000431357 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP4-205ENST00000431357 MRPL50Q8N5N7 158 aaKnown RBP14.19□□□□□ -0.14
USP4-205ENST00000431357 SENP3Q9H4L4 574 aaPredicted RBP14.19□□□□□ -0.14
USP4-205ENST00000431357 RBM25P49756 843 aaKnown RBP14.18□□□□□ -0.14
USP4-205ENST00000431357 HSCBQ8IWL3 235 aa14.18□□□□□ -0.14
USP4-205ENST00000431357 ZBTB7BO15156 539 aaPredicted RBP14.18□□□□□ -0.14
USP4-205ENST00000431357 IL13P35225 146 aa14.18□□□□□ -0.14
USP4-205ENST00000431357 RTN4Q9NQC3 1192 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms