RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ATAD2Q6PL18 1390 aa18.39■□□□□ 0.53
LIG1-202ENST00000427526 CABP1Q9NZU7 370 aa18.39■□□□□ 0.53
LIG1-202ENST00000427526 CANXP27824 592 aaKnown RBP18.39■□□□□ 0.53
LIG1-202ENST00000427526 HDGFP51858 240 aaKnown RBP18.39■□□□□ 0.53
LIG1-202ENST00000427526 ABCC11Q96J66 1382 aa18.38■□□□□ 0.53
LIG1-202ENST00000427526 TMEM2Q9UHN6 1383 aa18.38■□□□□ 0.53
LIG1-202ENST00000427526 AAMPQ13685 434 aa18.38■□□□□ 0.53
LIG1-202ENST00000427526 GGNBP2Q9H3C7 697 aa18.37■□□□□ 0.53
LIG1-202ENST00000427526 VIRMAQ69YN4 1812 aaKnown RBP18.37■□□□□ 0.53
LIG1-202ENST00000427526 FRAT1Q92837 279 aaPredicted RBP18.37■□□□□ 0.53
LIG1-202ENST00000427526 TERF2IPQ9NYB0 399 aa18.37■□□□□ 0.53
LIG1-202ENST00000427526 NRXN3Q9Y4C0 1643 aa18.37■□□□□ 0.53
LIG1-202ENST00000427526 SETD1AO15047 1707 aaKnown RBP18.36■□□□□ 0.53
LIG1-202ENST00000427526 MAPK8IP3Q9UPT6 1336 aa18.36■□□□□ 0.53
LIG1-202ENST00000427526 LTKP29376 864 aa18.36■□□□□ 0.53
LIG1-202ENST00000427526 CD163L1Q9NR16 1453 aa18.35■□□□□ 0.53
LIG1-202ENST00000427526 RLBP1P12271 317 aa18.35■□□□□ 0.53
LIG1-202ENST00000427526 ADGRB2O60241 1585 aa18.35■□□□□ 0.53
LIG1-202ENST00000427526 USP19O94966 1318 aa18.35■□□□□ 0.53
LIG1-202ENST00000427526 DLC1Q96QB1 1528 aa18.34■□□□□ 0.53
LIG1-202ENST00000427526 FYB1O15117 783 aa18.34■□□□□ 0.53
LIG1-202ENST00000427526 DAXXQ9UER7 740 aaPredicted RBP18.34■□□□□ 0.53
LIG1-202ENST00000427526 NFKBIBQ15653 356 aa18.33■□□□□ 0.53
LIG1-202ENST00000427526 TNNQ9UQP3 1299 aa18.33■□□□□ 0.52
LIG1-202ENST00000427526 PCDHB15Q9Y5E8 787 aa18.33■□□□□ 0.52
LIG1-202ENST00000427526 U2AF1L5P0DN76 240 aaPredicted RBP18.32■□□□□ 0.52
LIG1-202ENST00000427526 U2AF1Q01081 240 aaKnown RBP eCLIP18.32■□□□□ 0.52
LIG1-202ENST00000427526 HDGFL2Q7Z4V5 671 aaPredicted RBP18.32■□□□□ 0.52
LIG1-202ENST00000427526 PMFBP1Q8TBY8 1022 aa18.32■□□□□ 0.52
LIG1-202ENST00000427526 MYH16Q9H6N6 1097 aa18.32■□□□□ 0.52
LIG1-202ENST00000427526 UBR1Q8IWV7 1749 aa18.32■□□□□ 0.52
LIG1-202ENST00000427526 WASLO00401 505 aaPredicted RBP18.31■□□□□ 0.52
LIG1-202ENST00000427526 EIF5BO60841 1220 aaKnown RBP18.3■□□□□ 0.52
LIG1-202ENST00000427526 PLEKHF1Q96S99 279 aa18.3■□□□□ 0.52
LIG1-202ENST00000427526 BCL2L13Q9BXK5 485 aa18.3■□□□□ 0.52
LIG1-202ENST00000427526 SEC24BO95487 1268 aa18.29■□□□□ 0.52
LIG1-202ENST00000427526 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.29■□□□□ 0.52
LIG1-202ENST00000427526 SLC26A8Q96RN1 970 aa18.29■□□□□ 0.52
LIG1-202ENST00000427526 NCKAP5LQ9HCH0 1330 aa18.29■□□□□ 0.52
LIG1-202ENST00000427526 COL3A1P02461 1466 aaPredicted RBP18.29■□□□□ 0.52
LIG1-202ENST00000427526 ADAMTS13Q76LX8 1427 aa18.28■□□□□ 0.52
LIG1-202ENST00000427526 NLRP1Q9C000 1473 aa18.28■□□□□ 0.52
LIG1-202ENST00000427526 CT47B1P0C2W7 299 aaPredicted RBP18.27■□□□□ 0.52
LIG1-202ENST00000427526 MED14O60244 1454 aa18.26■□□□□ 0.51
LIG1-202ENST00000427526 SIRT1Q96EB6 747 aa18.26■□□□□ 0.51
LIG1-202ENST00000427526 ROBO2Q9HCK4 1378 aa18.26■□□□□ 0.51
LIG1-202ENST00000427526 FBLN1P23142 703 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 MVPQ14764 893 aaKnown RBP18.25■□□□□ 0.51
LIG1-202ENST00000427526 NUDT16Q96DE0 195 aaKnown RBP18.25■□□□□ 0.51
LIG1-202ENST00000427526 TRIM35Q9UPQ4 493 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 EID1Q9Y6B2 187 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 TECPR2O15040 1411 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 PLEKHG1Q9ULL1 1385 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 TMPOP42166 694 aaKnown RBP18.25■□□□□ 0.51
LIG1-202ENST00000427526 FAM135BQ49AJ0 1406 aa18.25■□□□□ 0.51
LIG1-202ENST00000427526 C3P01024 1663 aa18.24■□□□□ 0.51
LIG1-202ENST00000427526 RWDD1Q9H446 243 aaPredicted RBP18.24■□□□□ 0.51
LIG1-202ENST00000427526 PDZRN3Q9UPQ7 1066 aa18.24■□□□□ 0.51
LIG1-202ENST00000427526 ANKRD26Q9UPS8 1709 aa18.24■□□□□ 0.51
LIG1-202ENST00000427526 GSE1Q14687 1217 aa18.24■□□□□ 0.51
LIG1-202ENST00000427526 ZKSCAN2Q63HK3 967 aa18.24■□□□□ 0.51
LIG1-202ENST00000427526 TSR2Q969E8 191 aaKnown RBP18.23■□□□□ 0.51
LIG1-202ENST00000427526 PPIP5K1Q6PFW1 1433 aa18.23■□□□□ 0.51
LIG1-202ENST00000427526 DZIP1LQ8IYY4 767 aaKnown RBP18.22■□□□□ 0.51
LIG1-202ENST00000427526 U2SURPO15042 1029 aaKnown RBP18.21■□□□□ 0.51
LIG1-202ENST00000427526 CCDC61Q9Y6R9 512 aa18.21■□□□□ 0.51
LIG1-202ENST00000427526 PNPLA6Q8IY17 1366 aa18.21■□□□□ 0.51
LIG1-202ENST00000427526 EXOSC9Q06265 439 aaKnown RBP18.21■□□□□ 0.51
LIG1-202ENST00000427526 IL16Q14005 1332 aa18.21■□□□□ 0.51
LIG1-202ENST00000427526 NUTM2FA1L443 756 aa18.2■□□□□ 0.5
LIG1-202ENST00000427526 PRR36Q9H6K5 1346 aa18.2■□□□□ 0.5
LIG1-202ENST00000427526 ATP7BP35670 1465 aa18.2■□□□□ 0.5
LIG1-202ENST00000427526 FER1L4A9Z1Z3 1794 aa18.2■□□□□ 0.5
LIG1-202ENST00000427526 THEMISQ8N1K5 641 aaPredicted RBP18.2■□□□□ 0.5
LIG1-202ENST00000427526 ZRANB1Q9UGI0 708 aa18.2■□□□□ 0.5
LIG1-202ENST00000427526 PTPRUQ92729 1446 aa18.19■□□□□ 0.5
LIG1-202ENST00000427526 FRAT2O75474 233 aaPredicted RBP18.19■□□□□ 0.5
LIG1-202ENST00000427526 CPS1P31327 1500 aa18.19■□□□□ 0.5
LIG1-202ENST00000427526 CPSF1Q10570 1443 aaKnown RBP18.19■□□□□ 0.5
LIG1-202ENST00000427526 NME9Q86XW9 330 aa18.19■□□□□ 0.5
LIG1-202ENST00000427526 TRIM27P14373 513 aa18.18■□□□□ 0.5
LIG1-202ENST00000427526 FTSJ3Q8IY81 847 aaKnown RBP18.18■□□□□ 0.5
LIG1-202ENST00000427526 SSH1Q8WYL5 1049 aa18.18■□□□□ 0.5
LIG1-202ENST00000427526 AMOTL2Q9Y2J4 779 aa18.18■□□□□ 0.5
LIG1-202ENST00000427526 KNDC1Q76NI1 1749 aa18.17■□□□□ 0.5
LIG1-202ENST00000427526 SMC4Q9NTJ3 1288 aa18.17■□□□□ 0.5
LIG1-202ENST00000427526 ARHGAP23Q9P227 1491 aa18.17■□□□□ 0.5
LIG1-202ENST00000427526 TBC1D32Q96NH3 1257 aa18.17■□□□□ 0.5
LIG1-202ENST00000427526 SLIT1O75093 1534 aa18.16■□□□□ 0.5
LIG1-202ENST00000427526 DIAPH1O60610 1272 aaKnown RBP18.16■□□□□ 0.5
LIG1-202ENST00000427526 POLKQ9UBT6 870 aa18.16■□□□□ 0.5
LIG1-202ENST00000427526 TBX22Q9Y458 520 aa18.16■□□□□ 0.5
LIG1-202ENST00000427526 RIPK4P57078 832 aa18.15■□□□□ 0.5
LIG1-202ENST00000427526 HDAC1Q13547 482 aaPredicted RBP18.15■□□□□ 0.5
LIG1-202ENST00000427526 BECN1Q14457 450 aa18.15■□□□□ 0.5
LIG1-202ENST00000427526 ATF7IPQ6VMQ6 1270 aa18.15■□□□□ 0.5
LIG1-202ENST00000427526 IL27Q8NEV9 243 aa18.15■□□□□ 0.5
LIG1-202ENST00000427526 EDC4Q6P2E9 1401 aaKnown RBP18.14■□□□□ 0.49
LIG1-202ENST00000427526 DDX19BQ9UMR2 479 aa18.14■□□□□ 0.49
LIG1-202ENST00000427526 CDC42BPGQ6DT37 1551 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms