RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 NFKBIBQ15653 356 aa17.14■□□□□ 0.33
PTPN13-203ENST00000427191 CCDC91Q7Z6B0 441 aa17.14■□□□□ 0.33
PTPN13-203ENST00000427191 TRAK2O60296 914 aa17.14■□□□□ 0.33
PTPN13-203ENST00000427191 UBTFL1P0CB47 393 aaPredicted RBP17.14■□□□□ 0.33
PTPN13-203ENST00000427191 FEZ1Q99689 392 aa17.14■□□□□ 0.33
PTPN13-203ENST00000427191 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
PTPN13-203ENST00000427191 CYB5RLQ6IPT4 315 aa17.13■□□□□ 0.33
PTPN13-203ENST00000427191 BCL2L13Q9BXK5 485 aa17.13■□□□□ 0.33
PTPN13-203ENST00000427191 RRP9O43818 475 aaKnown RBP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 CDKL5O76039 1030 aa17.12■□□□□ 0.33
PTPN13-203ENST00000427191 BRD4O60885 1362 aaPredicted RBP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 CLASRPQ8N2M8 674 aaKnown RBP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 RRBP1Q9P2E9 1410 aaKnown RBP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 TRIM22Q8IYM9 498 aa17.12■□□□□ 0.33
PTPN13-203ENST00000427191 WDR33Q9C0J8 1336 aaKnown RBP17.12■□□□□ 0.33
PTPN13-203ENST00000427191 PAF1Q8N7H5 531 aa17.11■□□□□ 0.33
PTPN13-203ENST00000427191 WASHC4Q2M389 1173 aa17.11■□□□□ 0.33
PTPN13-203ENST00000427191 LRRCC1Q9C099 1032 aa17.11■□□□□ 0.33
PTPN13-203ENST00000427191 EIF2S2P20042 333 aaKnown RBP17.11■□□□□ 0.33
PTPN13-203ENST00000427191 MAP9Q49MG5 647 aa17.11■□□□□ 0.33
PTPN13-203ENST00000427191 SMG6Q86US8 1419 aaKnown RBP17.11■□□□□ 0.33
PTPN13-203ENST00000427191 KRT18P05783 430 aaKnown RBP17.11■□□□□ 0.33
PTPN13-203ENST00000427191 TRAK1Q9UPV9 953 aa17.11■□□□□ 0.33
PTPN13-203ENST00000427191 SLC4A3P48751 1232 aa17.1■□□□□ 0.33
PTPN13-203ENST00000427191 GCC1Q96CN9 775 aa17.1■□□□□ 0.33
PTPN13-203ENST00000427191 GNL3LQ9NVN8 582 aaKnown RBP17.1■□□□□ 0.33
PTPN13-203ENST00000427191 SERPINC1P01008 464 aa17.1■□□□□ 0.33
PTPN13-203ENST00000427191 JAKMIP3Q5VZ66 844 aa17.1■□□□□ 0.33
PTPN13-203ENST00000427191 STK38Q15208 465 aa17.1■□□□□ 0.33
PTPN13-203ENST00000427191 HMGB2P26583 209 aaKnown RBP17.09■□□□□ 0.33
PTPN13-203ENST00000427191 TMEM132AQ24JP5 1023 aa17.09■□□□□ 0.33
PTPN13-203ENST00000427191 FBXW7Q969H0 707 aa17.09■□□□□ 0.33
PTPN13-203ENST00000427191 CFAP45Q9UL16 551 aa17.09■□□□□ 0.33
PTPN13-203ENST00000427191 PLCD4Q9BRC7 762 aa17.09■□□□□ 0.33
PTPN13-203ENST00000427191 TSPYL4Q9UJ04 414 aa17.09■□□□□ 0.33
PTPN13-203ENST00000427191 FSD1Q9BTV5 496 aa17.08■□□□□ 0.33
PTPN13-203ENST00000427191 CCDC88BA6NC98 1476 aa17.08■□□□□ 0.32
PTPN13-203ENST00000427191 KANK4Q5T7N3 995 aaPredicted RBP17.08■□□□□ 0.32
PTPN13-203ENST00000427191 PLIN1O60240 522 aa17.08■□□□□ 0.32
PTPN13-203ENST00000427191 RIC3Q7Z5B4 369 aa17.08■□□□□ 0.32
PTPN13-203ENST00000427191 DDX11Q96FC9 970 aa17.08■□□□□ 0.32
PTPN13-203ENST00000427191 CETN2P41208 172 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 CCDC30Q5VVM6 783 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 SRCIN1Q9C0H9 1055 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 ELL2O00472 640 aaPredicted RBP17.07■□□□□ 0.32
PTPN13-203ENST00000427191 STAMBPO95630 424 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 KRT85P78386 507 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 TTLL5Q6EMB2 1281 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 SMTNL1A8MU46 457 aa17.07■□□□□ 0.32
PTPN13-203ENST00000427191 CIZ1Q9ULV3 898 aaPredicted RBP17.07■□□□□ 0.32
PTPN13-203ENST00000427191 TNMDQ9H2S6 317 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 NOL7Q9UMY1 257 aaKnown RBP17.06■□□□□ 0.32
PTPN13-203ENST00000427191 GOLGA6L10A0A0M3HER8 536 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 APAF1O14727 1248 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 NACAP1Q9BZK3 213 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 ANKRD62A6NC57 917 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 POTEJP0CG39 1038 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 ZSCAN25Q6NSZ9 544 aa17.06■□□□□ 0.32
PTPN13-203ENST00000427191 ZNF397Q8NF99 534 aaPredicted RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 MYOM3Q5VTT5 1437 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 CCDC148Q8NFR7 591 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 NUTM2DQ5VT03 806 aaPredicted RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 BMP2KQ9NSY1 1161 aaPredicted RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 SHTN1A0MZ66 631 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 IKQ13123 557 aaPredicted RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 IMMTQ16891 758 aaKnown RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 OSCARQ8IYS5 282 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 PPM1EQ8WY54 764 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 PDCL3Q9H2J4 239 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
PTPN13-203ENST00000427191 CCDC27Q2M243 656 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 PKNOX2Q96KN3 472 aa17.05■□□□□ 0.32
PTPN13-203ENST00000427191 CEP57L1Q8IYX8 460 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 RAPGEF4Q8WZA2 1011 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 NEUROD6Q96NK8 337 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 FYCO1Q9BQS8 1478 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 CCDC57Q2TAC2 916 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 LNPKQ9C0E8 428 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 WASF1Q92558 559 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 NF2P35240 595 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 CYP46A1Q9Y6A2 500 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 NUTM2FA1L443 756 aa17.04■□□□□ 0.32
PTPN13-203ENST00000427191 HNRNPMP52272 730 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPN13-203ENST00000427191 PSME1Q06323 249 aa17.03■□□□□ 0.32
PTPN13-203ENST00000427191 MICALCLQ6ZW33 695 aa17.03■□□□□ 0.32
PTPN13-203ENST00000427191 GIMAP7Q8NHV1 300 aa17.03■□□□□ 0.32
PTPN13-203ENST00000427191 PPP1R12BO60237 982 aaPredicted RBP17.03■□□□□ 0.32
PTPN13-203ENST00000427191 KIF6Q6ZMV9 814 aa17.03■□□□□ 0.32
PTPN13-203ENST00000427191 GAS2L2Q8NHY3 880 aa17.03■□□□□ 0.32
PTPN13-203ENST00000427191 KLHL34Q8N239 644 aa17.02■□□□□ 0.32
PTPN13-203ENST00000427191 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.31
PTPN13-203ENST00000427191 SPATA24Q86W54 205 aa17.02■□□□□ 0.31
PTPN13-203ENST00000427191 CEP131Q9UPN4 1083 aa17.02■□□□□ 0.31
PTPN13-203ENST00000427191 PDE3AQ14432 1141 aa17.01■□□□□ 0.31
PTPN13-203ENST00000427191 POLR3GO15318 223 aaPredicted RBP17.01■□□□□ 0.31
PTPN13-203ENST00000427191 TAF4BQ92750 862 aa17.01■□□□□ 0.31
PTPN13-203ENST00000427191 KRT32Q14532 448 aa17.01■□□□□ 0.31
PTPN13-203ENST00000427191 RNF214Q8ND24 703 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms