RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ACEP12821 1306 aa35.06■■■■□ 3.2
LDB1-202ENST00000425280 NRKQ7Z2Y5 1582 aa35.05■■■■□ 3.2
LDB1-202ENST00000425280 ZRANB1Q9UGI0 708 aa35.02■■■■□ 3.2
LDB1-202ENST00000425280 PNPLA6Q8IY17 1366 aa35.02■■■■□ 3.2
LDB1-202ENST00000425280 NGEFQ8N5V2 710 aa35.01■■■■□ 3.2
LDB1-202ENST00000425280 RUNDC1Q96C34 613 aa35.01■■■■□ 3.2
LDB1-202ENST00000425280 RGPD8O14715 1765 aaPredicted RBP35.01■■■■□ 3.2
LDB1-202ENST00000425280 ERICH6BQ5W0A0 696 aa35.01■■■■□ 3.19
LDB1-202ENST00000425280 USP6P35125 1406 aa34.99■■■■□ 3.19
LDB1-202ENST00000425280 POLKQ9UBT6 870 aa34.99■■■■□ 3.19
LDB1-202ENST00000425280 FMN2Q9NZ56 1722 aa34.98■■■■□ 3.19
LDB1-202ENST00000425280 TTC21BQ7Z4L5 1316 aa34.98■■■■□ 3.19
LDB1-202ENST00000425280 ANKARQ7Z5J8 1434 aa34.98■■■■□ 3.19
LDB1-202ENST00000425280 IQSEC2Q5JU85 1478 aa34.98■■■■□ 3.19
LDB1-202ENST00000425280 U2AF1L5P0DN76 240 aaPredicted RBP34.97■■■■□ 3.19
LDB1-202ENST00000425280 FBLN1P23142 703 aa34.97■■■■□ 3.19
LDB1-202ENST00000425280 U2AF1Q01081 240 aaKnown RBP eCLIP34.97■■■■□ 3.19
LDB1-202ENST00000425280 GOLGA2Q08379 1002 aa34.97■■■■□ 3.19
LDB1-202ENST00000425280 COG3Q96JB2 828 aa34.97■■■■□ 3.19
LDB1-202ENST00000425280 MAP2P11137 1827 aaKnown RBP34.97■■■■□ 3.19
LDB1-202ENST00000425280 RCAN3Q9UKA8 241 aa34.96■■■■□ 3.19
LDB1-202ENST00000425280 NALCNQ8IZF0 1738 aa34.96■■■■□ 3.19
LDB1-202ENST00000425280 AATKQ6ZMQ8 1374 aa34.94■■■■□ 3.18
LDB1-202ENST00000425280 SSH2Q76I76 1423 aa34.93■■■■□ 3.18
LDB1-202ENST00000425280 PMFBP1Q8TBY8 1022 aa34.93■■■■□ 3.18
LDB1-202ENST00000425280 DIAPH1O60610 1272 aaKnown RBP34.92■■■■□ 3.18
LDB1-202ENST00000425280 DUSP27Q5VZP5 1158 aa34.91■■■■□ 3.18
LDB1-202ENST00000425280 TCP11L2Q8N4U5 519 aa34.91■■■■□ 3.18
LDB1-202ENST00000425280 U2SURPO15042 1029 aaKnown RBP34.91■■■■□ 3.18
LDB1-202ENST00000425280 SLFN5Q08AF3 891 aa34.9■■■■□ 3.18
LDB1-202ENST00000425280 EMILIN1Q9Y6C2 1016 aa34.88■■■■□ 3.17
LDB1-202ENST00000425280 PPM1GO15355 546 aaPredicted RBP34.88■■■■□ 3.17
LDB1-202ENST00000425280 OVOS2A0A0J9YW53 1432 aa34.87■■■■□ 3.17
LDB1-202ENST00000425280 OVOS2Q6IE36 1432 aa34.87■■■■□ 3.17
LDB1-202ENST00000425280 TRMT2AQ8IZ69 625 aaKnown RBP34.87■■■■□ 3.17
LDB1-202ENST00000425280 NGDNQ8NEJ9 315 aaKnown RBP34.87■■■■□ 3.17
LDB1-202ENST00000425280 WWC1Q8IX03 1113 aa34.86■■■■□ 3.17
LDB1-202ENST00000425280 RBM33Q96EV2 1170 aaKnown RBP34.86■■■■□ 3.17
LDB1-202ENST00000425280 NWD1Q149M9 1564 aa34.86■■■■□ 3.17
LDB1-202ENST00000425280 CDK12Q9NYV4 1490 aaPredicted RBP34.86■■■■□ 3.17
LDB1-202ENST00000425280 RRP7AQ9Y3A4 280 aaKnown RBP34.85■■■■□ 3.17
LDB1-202ENST00000425280 ADGRL3Q9HAR2 1447 aa34.85■■■■□ 3.17
LDB1-202ENST00000425280 SPINK5Q9NQ38 1064 aaPredicted RBP34.85■■■■□ 3.17
LDB1-202ENST00000425280 RRP1P56182 461 aaKnown RBP34.84■■■■□ 3.17
LDB1-202ENST00000425280 TTC21AQ8NDW8 1320 aa34.84■■■■□ 3.17
LDB1-202ENST00000425280 PLEKHF1Q96S99 279 aa34.83■■■■□ 3.17
LDB1-202ENST00000425280 PHF23Q9BUL5 403 aaPredicted RBP34.83■■■■□ 3.17
LDB1-202ENST00000425280 DMRT2Q9Y5R5 561 aa34.83■■■■□ 3.17
LDB1-202ENST00000425280 NEUROD2Q15784 382 aa34.82■■■■□ 3.16
LDB1-202ENST00000425280 PPP4R2Q9NY27 417 aa34.82■■■■□ 3.16
LDB1-202ENST00000425280 E9PSI1 815 aa34.81■■■■□ 3.16
LDB1-202ENST00000425280 RRS1Q15050 365 aaKnown RBP34.81■■■■□ 3.16
LDB1-202ENST00000425280 NCBP3Q53F19 620 aaKnown RBP34.81■■■■□ 3.16
LDB1-202ENST00000425280 CCDC27Q2M243 656 aa34.79■■■■□ 3.16
LDB1-202ENST00000425280 USP31Q70CQ4 1352 aa34.77■■■■□ 3.16
LDB1-202ENST00000425280 IL13P35225 146 aa34.75■■■■□ 3.15
LDB1-202ENST00000425280 PELP1Q8IZL8 1130 aaKnown RBP34.74■■■■□ 3.15
LDB1-202ENST00000425280 PIK3C2AO00443 1686 aa34.73■■■■□ 3.15
LDB1-202ENST00000425280 FCHSD2O94868 740 aa34.73■■■■□ 3.15
LDB1-202ENST00000425280 PNNQ9H307 717 aaKnown RBP34.73■■■■□ 3.15
LDB1-202ENST00000425280 WDR63Q8IWG1 891 aa34.72■■■■□ 3.15
LDB1-202ENST00000425280 LRRC7Q96NW7 1537 aa34.72■■■■□ 3.15
LDB1-202ENST00000425280 MAPK8IP3Q9UPT6 1336 aa34.72■■■■□ 3.15
LDB1-202ENST00000425280 PHF8Q9UPP1 1060 aa34.71■■■■□ 3.15
LDB1-202ENST00000425280 C14orf37Q86TY3 774 aa34.7■■■■□ 3.15
LDB1-202ENST00000425280 RSPH6AQ9H0K4 717 aa34.7■■■■□ 3.15
LDB1-202ENST00000425280 KDM4FA0A1W2PPD8 638 aa34.69■■■■□ 3.14
LDB1-202ENST00000425280 TMPOP42166 694 aaKnown RBP34.69■■■■□ 3.14
LDB1-202ENST00000425280 PROSER2Q86WR7 435 aaPredicted RBP34.68■■■■□ 3.14
LDB1-202ENST00000425280 PEAK1Q9H792 1746 aa34.66■■■■□ 3.14
LDB1-202ENST00000425280 HSPA2P54652 639 aa34.65■■■■□ 3.14
LDB1-202ENST00000425280 PRKAR2BP31323 418 aa34.64■■■■□ 3.14
LDB1-202ENST00000425280 USP54Q70EL1 1684 aa34.63■■■■□ 3.13
LDB1-202ENST00000425280 HMOX1P09601 288 aa34.62■■■■□ 3.13
LDB1-202ENST00000425280 MARF1Q9Y4F3 1742 aaKnown RBP34.62■■■■□ 3.13
LDB1-202ENST00000425280 PLIN1O60240 522 aa34.62■■■■□ 3.13
LDB1-202ENST00000425280 TRIM35Q9UPQ4 493 aa34.62■■■■□ 3.13
LDB1-202ENST00000425280 ESCO1Q5FWF5 840 aa34.61■■■■□ 3.13
LDB1-202ENST00000425280 SOX12O15370 315 aa34.61■■■■□ 3.13
LDB1-202ENST00000425280 B4GALNT3Q6L9W6 998 aa34.61■■■■□ 3.13
LDB1-202ENST00000425280 NLRP6P59044 892 aa34.6■■■■□ 3.13
LDB1-202ENST00000425280 STRCP1A6NGW2 1772 aa34.59■■■■□ 3.13
LDB1-202ENST00000425280 EIF4A2Q14240 407 aaKnown RBP34.58■■■■□ 3.13
LDB1-202ENST00000425280 MAP3K19Q56UN5 1328 aa34.58■■■■□ 3.13
LDB1-202ENST00000425280 RIPK4P57078 832 aa34.58■■■■□ 3.13
LDB1-202ENST00000425280 PAK3O75914 559 aaPredicted RBP34.56■■■■□ 3.12
LDB1-202ENST00000425280 ABTB2Q8N961 1025 aa34.56■■■■□ 3.12
LDB1-202ENST00000425280 NEFMP07197 916 aa34.56■■■■□ 3.12
LDB1-202ENST00000425280 HSP90AB2PQ58FF8 381 aa34.55■■■■□ 3.12
LDB1-202ENST00000425280 EXOC6Q8TAG9 804 aa34.55■■■■□ 3.12
LDB1-202ENST00000425280 PHACTR3Q96KR7 559 aa34.55■■■■□ 3.12
LDB1-202ENST00000425280 LMTK3Q96Q04 1460 aa34.55■■■■□ 3.12
LDB1-202ENST00000425280 NUTM2GQ5VZR2 741 aa34.54■■■■□ 3.12
LDB1-202ENST00000425280 C19orf44Q9H6X5 657 aa34.54■■■■□ 3.12
LDB1-202ENST00000425280 SBNO1A3KN83 1393 aa34.53■■■■□ 3.12
LDB1-202ENST00000425280 MYH16Q9H6N6 1097 aa34.53■■■■□ 3.12
LDB1-202ENST00000425280 ORAI2Q96SN7 254 aa34.53■■■■□ 3.12
LDB1-202ENST00000425280 PSME1Q06323 249 aa34.51■■■■□ 3.12
LDB1-202ENST00000425280 NFE2L2Q16236 605 aa34.51■■■■□ 3.11
LDB1-202ENST00000425280 FLT4P35916 1363 aa34.51■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms