RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 POLR3AO14802 1390 aaPredicted RBP36.37■■■■□ 3.41
VEGFA-208ENST00000417285 ALS2Q96Q42 1657 aa36.35■■■■□ 3.41
VEGFA-208ENST00000417285 SRPK2P78362 688 aaKnown RBP36.35■■■■□ 3.41
VEGFA-208ENST00000417285 BTG4Q9NY30 223 aa36.35■■■■□ 3.41
VEGFA-208ENST00000417285 ITSN1Q15811 1721 aa36.34■■■■□ 3.41
VEGFA-208ENST00000417285 SEPT12Q8IYM1 358 aa36.33■■■■□ 3.41
VEGFA-208ENST00000417285 GLI3P10071 1580 aa36.32■■■■□ 3.41
VEGFA-208ENST00000417285 NWD2Q9ULI1 1742 aa36.32■■■■□ 3.4
VEGFA-208ENST00000417285 ABCA3Q99758 1704 aa36.31■■■■□ 3.4
VEGFA-208ENST00000417285 PRDM11Q9NQV5 511 aa36.29■■■■□ 3.4
VEGFA-208ENST00000417285 CABP2Q9NPB3 220 aa36.28■■■■□ 3.4
VEGFA-208ENST00000417285 EP400Q96L91 3159 aa36.27■■■■□ 3.4
VEGFA-208ENST00000417285 PLCH1Q4KWH8 1693 aa36.26■■■■□ 3.4
VEGFA-208ENST00000417285 TRIM26Q12899 539 aaPredicted RBP36.26■■■■□ 3.4
VEGFA-208ENST00000417285 ABTB2Q8N961 1025 aa36.24■■■■□ 3.39
VEGFA-208ENST00000417285 ROCK2O75116 1388 aaKnown RBP36.23■■■■□ 3.39
VEGFA-208ENST00000417285 NUTM2GQ5VZR2 741 aa36.22■■■■□ 3.39
VEGFA-208ENST00000417285 EVC2Q86UK5 1308 aa36.22■■■■□ 3.39
VEGFA-208ENST00000417285 PPIP5K1Q6PFW1 1433 aa36.22■■■■□ 3.39
VEGFA-208ENST00000417285 COL14A1Q05707 1796 aaKnown RBP36.22■■■■□ 3.39
VEGFA-208ENST00000417285 BRD4O60885 1362 aaPredicted RBP36.21■■■■□ 3.39
VEGFA-208ENST00000417285 KRT27Q7Z3Y8 459 aa36.2■■■■□ 3.39
VEGFA-208ENST00000417285 CABP1Q9NZU7 370 aa36.2■■■■□ 3.39
VEGFA-208ENST00000417285 TOPAZ1Q8N9V7 1692 aa36.19■■■■□ 3.38
VEGFA-208ENST00000417285 KIAA0232Q92628 1395 aa36.18■■■■□ 3.38
VEGFA-208ENST00000417285 NLRP13Q86W25 1043 aa36.18■■■■□ 3.38
VEGFA-208ENST00000417285 SPATA31A5Q5VU36 1347 aa36.17■■■■□ 3.38
VEGFA-208ENST00000417285 SPATA31A7Q8IWB4 1347 aa36.17■■■■□ 3.38
VEGFA-208ENST00000417285 ZC3H6P61129 1189 aaKnown RBP36.17■■■■□ 3.38
VEGFA-208ENST00000417285 FAM98CQ17RN3 349 aaKnown RBP36.17■■■■□ 3.38
VEGFA-208ENST00000417285 A0A0G2JS52 829 aa36.16■■■■□ 3.38
VEGFA-208ENST00000417285 MYT1Q01538 1121 aa36.16■■■■□ 3.38
VEGFA-208ENST00000417285 TRPM1Q7Z4N2 1603 aa36.16■■■■□ 3.38
VEGFA-208ENST00000417285 BLMP54132 1417 aaPredicted RBP36.14■■■■□ 3.38
VEGFA-208ENST00000417285 CHRNA2Q15822 529 aa36.13■■■■□ 3.37
VEGFA-208ENST00000417285 CRYBG1Q9Y4K1 1723 aa36.13■■■■□ 3.37
VEGFA-208ENST00000417285 SF3B2Q13435 895 aaKnown RBP36.12■■■■□ 3.37
VEGFA-208ENST00000417285 QRICH2Q9H0J4 1663 aa36.11■■■■□ 3.37
VEGFA-208ENST00000417285 ZRANB1Q9UGI0 708 aa36.11■■■■□ 3.37
VEGFA-208ENST00000417285 NRAPQ86VF7 1730 aa36.11■■■■□ 3.37
VEGFA-208ENST00000417285 USP19O94966 1318 aa36.1■■■■□ 3.37
VEGFA-208ENST00000417285 ZNF692Q9BU19 519 aaPredicted RBP36.09■■■■□ 3.37
VEGFA-208ENST00000417285 GCP02774 474 aa36.08■■■■□ 3.37
VEGFA-208ENST00000417285 EVA1CP58658 441 aa36.08■■■■□ 3.37
VEGFA-208ENST00000417285 CPDO75976 1380 aa36.07■■■■□ 3.36
VEGFA-208ENST00000417285 STRN4Q9NRL3 753 aa36.07■■■■□ 3.36
VEGFA-208ENST00000417285 SPATA31A1Q5TZJ5 1347 aa36.07■■■■□ 3.36
VEGFA-208ENST00000417285 BRWD3Q6RI45 1802 aa36.06■■■■□ 3.36
VEGFA-208ENST00000417285 USP6P35125 1406 aa36.04■■■■□ 3.36
VEGFA-208ENST00000417285 NLRP6P59044 892 aa36.04■■■■□ 3.36
VEGFA-208ENST00000417285 TONSLQ96HA7 1378 aa36.03■■■■□ 3.36
VEGFA-208ENST00000417285 CARD11Q9BXL7 1154 aa36.03■■■■□ 3.36
VEGFA-208ENST00000417285 PHRF1Q9P1Y6 1649 aaKnown RBP36.02■■■■□ 3.36
VEGFA-208ENST00000417285 SBNO2Q9Y2G9 1366 aa35.97■■■■□ 3.35
VEGFA-208ENST00000417285 SSH2Q76I76 1423 aa35.97■■■■□ 3.35
VEGFA-208ENST00000417285 BARGINQ6ZT62 677 aa35.96■■■■□ 3.35
VEGFA-208ENST00000417285 DEFB132Q7Z7B7 95 aa35.96■■■■□ 3.35
VEGFA-208ENST00000417285 NRKQ7Z2Y5 1582 aa35.93■■■■□ 3.34
VEGFA-208ENST00000417285 LARP1Q6PKG0 1096 aaKnown RBP35.93■■■■□ 3.34
VEGFA-208ENST00000417285 USP35Q9P2H5 1018 aa35.93■■■■□ 3.34
VEGFA-208ENST00000417285 TTC21BQ7Z4L5 1316 aa35.92■■■■□ 3.34
VEGFA-208ENST00000417285 CAMTA1Q9Y6Y1 1673 aa35.92■■■■□ 3.34
VEGFA-208ENST00000417285 BAG6P46379 1132 aa35.92■■■■□ 3.34
VEGFA-208ENST00000417285 TCP11L2Q8N4U5 519 aa35.91■■■■□ 3.34
VEGFA-208ENST00000417285 THRAP3Q9Y2W1 955 aaKnown RBP35.91■■■■□ 3.34
VEGFA-208ENST00000417285 TTC21AQ8NDW8 1320 aa35.9■■■■□ 3.34
VEGFA-208ENST00000417285 SRCAPQ6ZRS2 3230 aa35.9■■■■□ 3.34
VEGFA-208ENST00000417285 AATKQ6ZMQ8 1374 aa35.89■■■■□ 3.34
VEGFA-208ENST00000417285 FAM196AQ6ZSG2 479 aa35.88■■■■□ 3.33
VEGFA-208ENST00000417285 KCNH5Q8NCM2 988 aa35.88■■■■□ 3.33
VEGFA-208ENST00000417285 THSD7AQ9UPZ6 1657 aa35.88■■■■□ 3.33
VEGFA-208ENST00000417285 CPSF1Q10570 1443 aaKnown RBP35.87■■■■□ 3.33
VEGFA-208ENST00000417285 FAM182BQ5T319 152 aa35.87■■■■□ 3.33
VEGFA-208ENST00000417285 KTN1Q86UP2 1357 aaKnown RBP35.86■■■■□ 3.33
VEGFA-208ENST00000417285 PDE3BQ13370 1112 aa35.85■■■■□ 3.33
VEGFA-208ENST00000417285 ZBTB7CA1YPR0 619 aa35.84■■■■□ 3.33
VEGFA-208ENST00000417285 PUS7Q96PZ0 661 aaKnown RBP35.84■■■■□ 3.33
VEGFA-208ENST00000417285 LMO7Q8WWI1 1683 aa35.83■■■■□ 3.33
VEGFA-208ENST00000417285 SLIT3O75094 1523 aa35.83■■■■□ 3.33
VEGFA-208ENST00000417285 SLC24A1O60721 1099 aa35.82■■■■□ 3.32
VEGFA-208ENST00000417285 ARHGEF25Q86VW2 580 aa35.8■■■■□ 3.32
VEGFA-208ENST00000417285 COL5A2P05997 1499 aaPredicted RBP35.8■■■■□ 3.32
VEGFA-208ENST00000417285 TMC1Q8TDI8 760 aa35.79■■■■□ 3.32
VEGFA-208ENST00000417285 CRB1P82279 1406 aa35.77■■■■□ 3.32
VEGFA-208ENST00000417285 HDGFL2Q7Z4V5 671 aaPredicted RBP35.77■■■■□ 3.32
VEGFA-208ENST00000417285 PIK3C2AO00443 1686 aa35.75■■■■□ 3.31
VEGFA-208ENST00000417285 EN1Q05925 392 aaPredicted RBP35.75■■■■□ 3.31
VEGFA-208ENST00000417285 C11orf95C9JLR9 678 aaPredicted RBP35.74■■■■□ 3.31
VEGFA-208ENST00000417285 SLC12A5Q9H2X9 1139 aa35.74■■■■□ 3.31
VEGFA-208ENST00000417285 TERF2IPQ9NYB0 399 aa35.74■■■■□ 3.31
VEGFA-208ENST00000417285 AXIN2Q9Y2T1 843 aa35.74■■■■□ 3.31
VEGFA-208ENST00000417285 TRIM37O94972 964 aa35.73■■■■□ 3.31
VEGFA-208ENST00000417285 TOM1L2Q6ZVM7 507 aa35.73■■■■□ 3.31
VEGFA-208ENST00000417285 AKAP12Q02952 1782 aa35.72■■■■□ 3.31
VEGFA-208ENST00000417285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.72■■■■□ 3.31
VEGFA-208ENST00000417285 ST20-MTHFSA0A0A6YYL1 179 aa35.7■■■■□ 3.31
VEGFA-208ENST00000417285 DISP2A7MBM2 1401 aa35.7■■■■□ 3.31
VEGFA-208ENST00000417285 SOX12O15370 315 aa35.7■■■■□ 3.31
VEGFA-208ENST00000417285 USP31Q70CQ4 1352 aa35.7■■■■□ 3.31
VEGFA-208ENST00000417285 WDR17Q8IZU2 1322 aa35.7■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms