RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 ATP7BP35670 1465 aa21.58■■□□□ 1.04
RPS28-201ENST00000417088 KRT27Q7Z3Y8 459 aa21.57■■□□□ 1.04
RPS28-201ENST00000417088 CDK19Q9BWU1 502 aa21.57■■□□□ 1.04
RPS28-201ENST00000417088 NRAPQ86VF7 1730 aa21.56■■□□□ 1.04
RPS28-201ENST00000417088 FAM98CQ17RN3 349 aaKnown RBP21.55■■□□□ 1.04
RPS28-201ENST00000417088 DEFB132Q7Z7B7 95 aa21.55■■□□□ 1.04
RPS28-201ENST00000417088 COL14A1Q05707 1796 aaKnown RBP21.54■■□□□ 1.04
RPS28-201ENST00000417088 CRYBG1Q9Y4K1 1723 aa21.53■■□□□ 1.04
RPS28-201ENST00000417088 A0A0G2JS52 829 aa21.53■■□□□ 1.04
RPS28-201ENST00000417088 MYT1Q01538 1121 aa21.53■■□□□ 1.04
RPS28-201ENST00000417088 SF3B2Q13435 895 aaKnown RBP21.53■■□□□ 1.04
RPS28-201ENST00000417088 NBPF1Q3BBV0 1214 aa21.53■■□□□ 1.04
RPS28-201ENST00000417088 ITSN1Q15811 1721 aa21.52■■□□□ 1.04
RPS28-201ENST00000417088 PRDM11Q9NQV5 511 aa21.52■■□□□ 1.04
RPS28-201ENST00000417088 SPATA31A5Q5VU36 1347 aa21.52■■□□□ 1.03
RPS28-201ENST00000417088 SPATA31A7Q8IWB4 1347 aa21.52■■□□□ 1.03
RPS28-201ENST00000417088 KIAA1210Q9ULL0 1709 aa21.52■■□□□ 1.03
RPS28-201ENST00000417088 CCDC61Q9Y6R9 512 aa21.51■■□□□ 1.03
RPS28-201ENST00000417088 POLR3AO14802 1390 aaPredicted RBP21.5■■□□□ 1.03
RPS28-201ENST00000417088 NBPF8Q3BBV2 869 aa21.5■■□□□ 1.03
RPS28-201ENST00000417088 ACEP12821 1306 aa21.5■■□□□ 1.03
RPS28-201ENST00000417088 PLEKHG3A1L390 1219 aa21.49■■□□□ 1.03
RPS28-201ENST00000417088 KIAA0232Q92628 1395 aa21.48■■□□□ 1.03
RPS28-201ENST00000417088 NUTM2GQ5VZR2 741 aa21.48■■□□□ 1.03
RPS28-201ENST00000417088 CHRNA2Q15822 529 aa21.47■■□□□ 1.03
RPS28-201ENST00000417088 TOPAZ1Q8N9V7 1692 aa21.47■■□□□ 1.03
RPS28-201ENST00000417088 ZC3H6P61129 1189 aaKnown RBP21.46■■□□□ 1.03
RPS28-201ENST00000417088 FAM182BQ5T319 152 aa21.44■■□□□ 1.02
RPS28-201ENST00000417088 SPATA31A1Q5TZJ5 1347 aa21.44■■□□□ 1.02
RPS28-201ENST00000417088 PHRF1Q9P1Y6 1649 aaKnown RBP21.44■■□□□ 1.02
RPS28-201ENST00000417088 CENPJQ9HC77 1338 aaPredicted RBP21.43■■□□□ 1.02
RPS28-201ENST00000417088 BAG6P46379 1132 aa21.42■■□□□ 1.02
RPS28-201ENST00000417088 SRPK2P78362 688 aaKnown RBP21.42■■□□□ 1.02
RPS28-201ENST00000417088 ABTB2Q8N961 1025 aa21.42■■□□□ 1.02
RPS28-201ENST00000417088 STRN4Q9NRL3 753 aa21.42■■□□□ 1.02
RPS28-201ENST00000417088 THSD7AQ9UPZ6 1657 aa21.42■■□□□ 1.02
RPS28-201ENST00000417088 CABP2Q9NPB3 220 aa21.41■■□□□ 1.02
RPS28-201ENST00000417088 L3MBTL2Q969R5 705 aa21.4■■□□□ 1.02
RPS28-201ENST00000417088 PPIP5K1Q6PFW1 1433 aa21.39■■□□□ 1.02
RPS28-201ENST00000417088 USP19O94966 1318 aa21.39■■□□□ 1.01
RPS28-201ENST00000417088 NRKQ7Z2Y5 1582 aa21.37■■□□□ 1.01
RPS28-201ENST00000417088 EVA1CP58658 441 aa21.37■■□□□ 1.01
RPS28-201ENST00000417088 EN1Q05925 392 aaPredicted RBP21.37■■□□□ 1.01
RPS28-201ENST00000417088 NLRP13Q86W25 1043 aa21.37■■□□□ 1.01
RPS28-201ENST00000417088 SSH2Q76I76 1423 aa21.37■■□□□ 1.01
RPS28-201ENST00000417088 CPDO75976 1380 aa21.36■■□□□ 1.01
RPS28-201ENST00000417088 CAMTA1Q9Y6Y1 1673 aa21.36■■□□□ 1.01
RPS28-201ENST00000417088 GCP02774 474 aa21.35■■□□□ 1.01
RPS28-201ENST00000417088 SIN3AQ96ST3 1273 aa21.35■■□□□ 1.01
RPS28-201ENST00000417088 CABP1Q9NZU7 370 aa21.35■■□□□ 1.01
RPS28-201ENST00000417088 USP35Q9P2H5 1018 aa21.35■■□□□ 1.01
RPS28-201ENST00000417088 LARP1Q6PKG0 1096 aaKnown RBP21.34■■□□□ 1.01
RPS28-201ENST00000417088 BARGINQ6ZT62 677 aa21.34■■□□□ 1.01
RPS28-201ENST00000417088 RGPD1P0DJD0 1748 aa21.34■■□□□ 1.01
RPS28-201ENST00000417088 BRD4O60885 1362 aaPredicted RBP21.34■■□□□ 1.01
RPS28-201ENST00000417088 QRICH2Q9H0J4 1663 aa21.34■■□□□ 1.01
RPS28-201ENST00000417088 DISP2A7MBM2 1401 aa21.33■■□□□ 1.01
RPS28-201ENST00000417088 PSDA5PKW4 1024 aaPredicted RBP21.33■■□□□ 1.01
RPS28-201ENST00000417088 LMO7Q8WWI1 1683 aa21.32■■□□□ 1
RPS28-201ENST00000417088 FAM196AQ6ZSG2 479 aa21.32■■□□□ 1
RPS28-201ENST00000417088 USP6P35125 1406 aa21.31■■□□□ 1
RPS28-201ENST00000417088 TRIM37O94972 964 aa21.3■■□□□ 1
RPS28-201ENST00000417088 TCP11L2Q8N4U5 519 aa21.3■■□□□ 1
RPS28-201ENST00000417088 NLRP6P59044 892 aa21.29■■□□□ 1
RPS28-201ENST00000417088 NEUROD1Q13562 356 aa21.29■■□□□ 1
RPS28-201ENST00000417088 TNS1Q9HBL0 1735 aaKnown RBP21.29■■□□□ 1
RPS28-201ENST00000417088 EVC2Q86UK5 1308 aa21.29■■□□□ 1
RPS28-201ENST00000417088 PDE3BQ13370 1112 aa21.28■■□□□ 1
RPS28-201ENST00000417088 EZH2Q15910 746 aaKnown RBP21.28■■□□□ 1
RPS28-201ENST00000417088 TRPM1Q7Z4N2 1603 aa21.28■■□□□ 1
RPS28-201ENST00000417088 CAMKK2Q96RR4 588 aa21.27■■□□□ 1
RPS28-201ENST00000417088 THRAP3Q9Y2W1 955 aaKnown RBP21.27■■□□□ 1
RPS28-201ENST00000417088 COL5A2P05997 1499 aaPredicted RBP21.26■□□□□ 0.99
RPS28-201ENST00000417088 LRP5O75197 1615 aa21.26■□□□□ 0.99
RPS28-201ENST00000417088 ROCK2O75116 1388 aaKnown RBP21.25■□□□□ 0.99
RPS28-201ENST00000417088 ZBTB7CA1YPR0 619 aa21.25■□□□□ 0.99
RPS28-201ENST00000417088 APBA3O96018 575 aa21.25■□□□□ 0.99
RPS28-201ENST00000417088 R3HDM1Q15032 1099 aaKnown RBP21.25■□□□□ 0.99
RPS28-201ENST00000417088 SLIT3O75094 1523 aa21.24■□□□□ 0.99
RPS28-201ENST00000417088 AATKQ6ZMQ8 1374 aa21.24■□□□□ 0.99
RPS28-201ENST00000417088 CRB1P82279 1406 aa21.22■□□□□ 0.99
RPS28-201ENST00000417088 ZNF692Q9BU19 519 aaPredicted RBP21.22■□□□□ 0.99
RPS28-201ENST00000417088 TTC21BQ7Z4L5 1316 aa21.21■□□□□ 0.99
RPS28-201ENST00000417088 PIK3C2AO00443 1686 aa21.21■□□□□ 0.99
RPS28-201ENST00000417088 PARD3Q8TEW0 1356 aa21.2■□□□□ 0.98
RPS28-201ENST00000417088 AXIN2Q9Y2T1 843 aa21.19■□□□□ 0.98
RPS28-201ENST00000417088 PARP4Q9UKK3 1724 aaKnown RBP21.18■□□□□ 0.98
RPS28-201ENST00000417088 CPSF1Q10570 1443 aaKnown RBP21.17■□□□□ 0.98
RPS28-201ENST00000417088 COL18A1P39060 1754 aa21.17■□□□□ 0.98
RPS28-201ENST00000417088 TTC21AQ8NDW8 1320 aa21.16■□□□□ 0.98
RPS28-201ENST00000417088 TOM1L2Q6ZVM7 507 aa21.16■□□□□ 0.98
RPS28-201ENST00000417088 ARHGEF25Q86VW2 580 aa21.16■□□□□ 0.98
RPS28-201ENST00000417088 KCNH5Q8NCM2 988 aa21.16■□□□□ 0.98
RPS28-201ENST00000417088 WDR17Q8IZU2 1322 aa21.15■□□□□ 0.98
RPS28-201ENST00000417088 C11orf95C9JLR9 678 aaPredicted RBP21.15■□□□□ 0.98
RPS28-201ENST00000417088 SOX12O15370 315 aa21.14■□□□□ 0.97
RPS28-201ENST00000417088 AKAP12Q02952 1782 aa21.14■□□□□ 0.97
RPS28-201ENST00000417088 KTN1Q86UP2 1357 aaKnown RBP21.13■□□□□ 0.97
RPS28-201ENST00000417088 DDB1Q16531 1140 aa21.13■□□□□ 0.97
RPS28-201ENST00000417088 OVOS2A0A0G2JMS6 1433 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms