RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 NISCHQ9Y2I1 1504 aa37.19■■■■□ 3.54
RPS28-201ENST00000417088 ABCC9O60706 1549 aa33.38■■■□□ 2.93
RPS28-201ENST00000417088 CCDC180Q9P1Z9 1646 aa33.31■■■□□ 2.92
RPS28-201ENST00000417088 RB1CC1Q8TDY2 1594 aa31.73■■■□□ 2.67
RPS28-201ENST00000417088 NACADO15069 1562 aa31.52■■■□□ 2.64
RPS28-201ENST00000417088 DCAF8L2P0C7V8 631 aa31.41■■■□□ 2.62
RPS28-201ENST00000417088 DNAJC5BQ9UF47 199 aa31.37■■■□□ 2.61
RPS28-201ENST00000417088 PABPN1Q86U42 306 aaKnown RBP eCLIP31.11■■■□□ 2.57
RPS28-201ENST00000417088 MYO15BQ96JP2 1530 aa31.11■■■□□ 2.57
RPS28-201ENST00000417088 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
RPS28-201ENST00000417088 BICRAQ9NZM4 1560 aa30.83■■■□□ 2.53
RPS28-201ENST00000417088 ZCCHC6Q5VYS8 1495 aaKnown RBP30.81■■■□□ 2.52
RPS28-201ENST00000417088 DCAF1Q9Y4B6 1507 aa30.71■■■□□ 2.51
RPS28-201ENST00000417088 SHROOM4Q9ULL8 1493 aa30.4■■■□□ 2.46
RPS28-201ENST00000417088 SCRIBQ14160 1630 aa30.38■■■□□ 2.45
RPS28-201ENST00000417088 CC2D2AQ9P2K1 1620 aa30.12■■■□□ 2.41
RPS28-201ENST00000417088 EIF4G1Q04637 1599 aaKnown RBP30.07■■■□□ 2.4
RPS28-201ENST00000417088 CECR2Q9BXF3 1484 aa30.06■■■□□ 2.4
RPS28-201ENST00000417088 NCAPD3P42695 1498 aa29.14■■■□□ 2.26
RPS28-201ENST00000417088 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
RPS28-201ENST00000417088 SMARCA4P51532 1647 aa28.98■■■□□ 2.23
RPS28-201ENST00000417088 SMARCA2P51531 1590 aa28.93■■■□□ 2.22
RPS28-201ENST00000417088 HMGXB3Q12766 1538 aa28.89■■■□□ 2.21
RPS28-201ENST00000417088 BAZ1AQ9NRL2 1556 aaPredicted RBP28.84■■■□□ 2.21
RPS28-201ENST00000417088 ERCC6Q03468 1493 aa28.79■■■□□ 2.2
RPS28-201ENST00000417088 DNAJC5Q9H3Z4 198 aa28.79■■■□□ 2.2
RPS28-201ENST00000417088 CUX2O14529 1486 aa28.75■■■□□ 2.19
RPS28-201ENST00000417088 BAZ1BQ9UIG0 1483 aaKnown RBP28.74■■■□□ 2.19
RPS28-201ENST00000417088 PEG3Q9GZU2 1588 aa28.71■■■□□ 2.19
RPS28-201ENST00000417088 NESP48681 1621 aa28.68■■■□□ 2.18
RPS28-201ENST00000417088 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
RPS28-201ENST00000417088 LAMC3Q9Y6N6 1575 aa28.44■■■□□ 2.14
RPS28-201ENST00000417088 THOC2Q8NI27 1593 aaKnown RBP28.35■■■□□ 2.13
RPS28-201ENST00000417088 PDS5BQ9NTI5 1447 aa28.3■■■□□ 2.12
RPS28-201ENST00000417088 WIZO95785 1651 aa28.29■■■□□ 2.12
RPS28-201ENST00000417088 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
RPS28-201ENST00000417088 KIF21AQ7Z4S6 1674 aa28.25■■■□□ 2.11
RPS28-201ENST00000417088 RSF1Q96T23 1441 aaPredicted RBP28.08■■■□□ 2.09
RPS28-201ENST00000417088 MRC2Q9UBG0 1479 aa28.05■■■□□ 2.08
RPS28-201ENST00000417088 WDR62O43379 1518 aa27.97■■■□□ 2.07
RPS28-201ENST00000417088 CEP164Q9UPV0 1460 aa27.94■■■□□ 2.06
RPS28-201ENST00000417088 TOP2AP11388 1531 aaKnown RBP27.93■■■□□ 2.06
RPS28-201ENST00000417088 CFTRP13569 1480 aa27.93■■■□□ 2.06
RPS28-201ENST00000417088 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
RPS28-201ENST00000417088 URB2Q14146 1524 aaKnown RBP27.7■■■□□ 2.02
RPS28-201ENST00000417088 CCDC88BA6NC98 1476 aa27.65■■■□□ 2.02
RPS28-201ENST00000417088 PRDM2Q13029 1718 aa27.55■■■□□ 2
RPS28-201ENST00000417088 TRIM41Q8WV44 630 aa27.5■■□□□ 1.99
RPS28-201ENST00000417088 OSCARQ8IYS5 282 aa27.47■■□□□ 1.99
RPS28-201ENST00000417088 IFT140Q96RY7 1462 aa27.39■■□□□ 1.98
RPS28-201ENST00000417088 TOPBP1Q92547 1522 aa27.39■■□□□ 1.98
RPS28-201ENST00000417088 ZNF608Q9ULD9 1512 aaPredicted RBP27.36■■□□□ 1.97
RPS28-201ENST00000417088 ABCC8Q09428 1581 aa27.32■■□□□ 1.96
RPS28-201ENST00000417088 DNMBPQ6XZF7 1577 aa27.26■■□□□ 1.96
RPS28-201ENST00000417088 EIF4G3O43432 1585 aaKnown RBP27.17■■□□□ 1.94
RPS28-201ENST00000417088 TARBP1Q13395 1621 aaKnown RBP27.13■■□□□ 1.93
RPS28-201ENST00000417088 AQRO60306 1485 aaKnown RBP eCLIP27.12■■□□□ 1.931e-6■■■□□ 15.8
RPS28-201ENST00000417088 POLA1P09884 1462 aaPredicted RBP27.12■■□□□ 1.93
RPS28-201ENST00000417088 RIMBP3CA6NJZ7 1639 aa27.07■■□□□ 1.92
RPS28-201ENST00000417088 RIMBP3BA6NNM3 1639 aa27.07■■□□□ 1.92
RPS28-201ENST00000417088 RIMBP3Q9UFD9 1639 aa27.07■■□□□ 1.92
RPS28-201ENST00000417088 RAD54L2Q9Y4B4 1467 aa27.03■■□□□ 1.92
RPS28-201ENST00000417088 ARHGEF11O15085 1522 aa27■■□□□ 1.91
RPS28-201ENST00000417088 SOGA1O94964 1423 aa27■■□□□ 1.91
RPS28-201ENST00000417088 TDRD9Q8NDG6 1382 aaKnown RBP26.97■■□□□ 1.91
RPS28-201ENST00000417088 CHD1O14646 1710 aa26.94■■□□□ 1.9
RPS28-201ENST00000417088 FBLN2P98095 1184 aa26.94■■□□□ 1.9
RPS28-201ENST00000417088 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
RPS28-201ENST00000417088 CUX1P39880 1505 aa26.91■■□□□ 1.9
RPS28-201ENST00000417088 SUPT5HO00267 1087 aaKnown RBP26.85■■□□□ 1.89
RPS28-201ENST00000417088 CYB5RLQ6IPT4 315 aa26.84■■□□□ 1.89
RPS28-201ENST00000417088 WDR97A6NE52 1622 aa26.83■■□□□ 1.89
RPS28-201ENST00000417088 SNAPC4Q5SXM2 1469 aa26.82■■□□□ 1.88
RPS28-201ENST00000417088 GRIN2BQ13224 1484 aa26.76■■□□□ 1.87
RPS28-201ENST00000417088 CHMP7Q8WUX9 453 aaPredicted RBP26.75■■□□□ 1.87
RPS28-201ENST00000417088 ARAP1Q96P48 1450 aa26.74■■□□□ 1.87
RPS28-201ENST00000417088 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
RPS28-201ENST00000417088 CLASP1Q7Z460 1538 aa26.68■■□□□ 1.86
RPS28-201ENST00000417088 SYNJ2O15056 1496 aa26.67■■□□□ 1.86
RPS28-201ENST00000417088 GAPVD1Q14C86 1478 aa26.66■■□□□ 1.86
RPS28-201ENST00000417088 SYNJ1O43426 1573 aa26.64■■□□□ 1.86
RPS28-201ENST00000417088 ABCA10Q8WWZ4 1543 aa26.64■■□□□ 1.85
RPS28-201ENST00000417088 PBRM1Q86U86 1689 aa26.59■■□□□ 1.85
RPS28-201ENST00000417088 ABCA5Q8WWZ7 1642 aa26.57■■□□□ 1.84
RPS28-201ENST00000417088 WRNQ14191 1432 aaPredicted RBP eCLIP26.54■■□□□ 1.845e-8■■□□□ 13
RPS28-201ENST00000417088 TRHP20396 242 aaPredicted RBP26.52■■□□□ 1.84
RPS28-201ENST00000417088 TOP2BQ02880 1626 aa26.47■■□□□ 1.83
RPS28-201ENST00000417088 BIVM-ERCC5R4GMW8 1640 aa26.46■■□□□ 1.83
RPS28-201ENST00000417088 GRIN2AQ12879 1464 aa26.41■■□□□ 1.82
RPS28-201ENST00000417088 ADAMTS12P58397 1594 aa26.37■■□□□ 1.81
RPS28-201ENST00000417088 FHAD1B1AJZ9 1412 aa26.33■■□□□ 1.81
RPS28-201ENST00000417088 NUP160Q12769 1436 aa26.33■■□□□ 1.81
RPS28-201ENST00000417088 CEP170Q5SW79 1584 aa26.31■■□□□ 1.8
RPS28-201ENST00000417088 ERICH3Q5RHP9 1530 aa26.29■■□□□ 1.8
RPS28-201ENST00000417088 ERCC6L2Q5T890 1561 aa26.28■■□□□ 1.8
RPS28-201ENST00000417088 SHROOM2Q13796 1616 aa26.18■■□□□ 1.78
RPS28-201ENST00000417088 JPH4Q96JJ6 628 aa26.09■■□□□ 1.77
RPS28-201ENST00000417088 PRG4Q92954 1404 aaPredicted RBP26.08■■□□□ 1.77
RPS28-201ENST00000417088 IGF1RP08069 1367 aa26■■□□□ 1.75
RPS28-201ENST00000417088 RUSC2Q8N2Y8 1516 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms