RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 FKBPLQ9UIM3 349 aa8.89□□□□□ -0.99
VPS54-204ENST00000416400 SLC19A1P41440 591 aa8.88□□□□□ -0.99
VPS54-204ENST00000416400 PTCRAQ6ISU1 281 aaPredicted RBP8.88□□□□□ -0.99
VPS54-204ENST00000416400 GJD4Q96KN9 370 aaPredicted RBP8.88□□□□□ -0.99
VPS54-204ENST00000416400 ZC3H4Q9UPT8 1303 aaKnown RBP8.87□□□□□ -0.99
VPS54-204ENST00000416400 ABL2P42684 1182 aa8.87□□□□□ -0.99
VPS54-204ENST00000416400 AGERQ15109 404 aa8.87□□□□□ -0.99
VPS54-204ENST00000416400 EPS8L1Q8TE68 723 aa8.87□□□□□ -0.99
VPS54-204ENST00000416400 GPKOWQ92917 476 aaPredicted RBP eCLIP8.87□□□□□ -0.99
VPS54-204ENST00000416400 TRIM34Q9BYJ4 488 aa8.87□□□□□ -0.99
VPS54-204ENST00000416400 GDPD2Q9HCC8 539 aa8.87□□□□□ -0.99
VPS54-204ENST00000416400 TBC1D2BQ9UPU7 963 aa8.86□□□□□ -0.99
VPS54-204ENST00000416400 TRIM32Q13049 653 aa8.85□□□□□ -0.99
VPS54-204ENST00000416400 PLA2G2CQ5R387 149 aa8.85□□□□□ -0.99
VPS54-204ENST00000416400 BAP1Q92560 729 aa8.85□□□□□ -0.99
VPS54-204ENST00000416400 COG6Q9Y2V7 657 aa8.85□□□□□ -0.99
VPS54-204ENST00000416400 A6NJR5 290 aa8.84□□□□□ -0.99
VPS54-204ENST00000416400 PTK2Q05397 1052 aa8.84□□□□□ -0.99
VPS54-204ENST00000416400 LINC01559Q495D7 138 aa8.84□□□□□ -0.99
VPS54-204ENST00000416400 CLUAP1Q96AJ1 413 aa8.84□□□□□ -0.99
VPS54-204ENST00000416400 PRKD2Q9BZL6 878 aa8.84□□□□□ -0.99
VPS54-204ENST00000416400 PDXDC2PQ6P474 469 aa8.83□□□□□ -1
VPS54-204ENST00000416400 LIAT1Q6ZQX7 453 aa8.83□□□□□ -1
VPS54-204ENST00000416400 ZNF511Q8NB15 262 aa8.83□□□□□ -1
VPS54-204ENST00000416400 ZNF330Q9Y3S2 320 aaPredicted RBP8.83□□□□□ -1
VPS54-204ENST00000416400 WNT7BP56706 349 aa8.82□□□□□ -1
VPS54-204ENST00000416400 WASHC4Q2M389 1173 aa8.82□□□□□ -1
VPS54-204ENST00000416400 BPHLQ86WA6 291 aaPredicted RBP8.82□□□□□ -1
VPS54-204ENST00000416400 POM121Q96HA1 1249 aa8.82□□□□□ -1
VPS54-204ENST00000416400 V9GY48 417 aaPredicted RBP8.82□□□□□ -1
VPS54-204ENST00000416400 ZBTB33Q86T24 672 aa8.81□□□□□ -1
VPS54-204ENST00000416400 ARHGAP9Q9BRR9 750 aa8.81□□□□□ -1
VPS54-204ENST00000416400 GPSM3Q9Y4H4 160 aa8.81□□□□□ -1
VPS54-204ENST00000416400 MAGEB6P1A0A0J9YX57 407 aa8.8□□□□□ -1
VPS54-204ENST00000416400 ARID3CA6NKF2 412 aa8.8□□□□□ -1
VPS54-204ENST00000416400 RGS20O76081 388 aa8.8□□□□□ -1
VPS54-204ENST00000416400 SPRYD7Q5W111 196 aa8.8□□□□□ -1
VPS54-204ENST00000416400 PROSER2Q86WR7 435 aaPredicted RBP8.8□□□□□ -1
VPS54-204ENST00000416400 ZNF592Q92610 1267 aa8.8□□□□□ -1
VPS54-204ENST00000416400 C1orf115Q9H7X2 142 aa8.8□□□□□ -1
VPS54-204ENST00000416400 ZBBXA8MT70 800 aa8.79□□□□□ -1
VPS54-204ENST00000416400 SH3BP2P78314 561 aa8.79□□□□□ -1
VPS54-204ENST00000416400 ARID3AQ99856 593 aa8.79□□□□□ -1
VPS54-204ENST00000416400 TRAK2O60296 914 aa8.78□□□□□ -1
VPS54-204ENST00000416400 ZNF697Q5TEC3 545 aa8.78□□□□□ -1
VPS54-204ENST00000416400 ZNF598Q86UK7 904 aaKnown RBP8.78□□□□□ -1
VPS54-204ENST00000416400 EHBP1Q8NDI1 1231 aa8.78□□□□□ -1
VPS54-204ENST00000416400 CARD14Q9BXL6 1004 aa8.78□□□□□ -1
VPS54-204ENST00000416400 NR1H3Q13133 447 aa8.77□□□□□ -1.01
VPS54-204ENST00000416400 FAM174AQ8TBP5 190 aa8.77□□□□□ -1.01
VPS54-204ENST00000416400 FOXJ1Q92949 421 aa8.77□□□□□ -1.01
VPS54-204ENST00000416400 VARSP26640 1264 aaKnown RBP8.76□□□□□ -1.01
VPS54-204ENST00000416400 EIF4G2P78344 907 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS54-204ENST00000416400 FOXC1Q12948 553 aa8.76□□□□□ -1.01
VPS54-204ENST00000416400 RC3H1Q5TC82 1133 aaKnown RBP8.76□□□□□ -1.01
VPS54-204ENST00000416400 SH3BP5LQ7L8J4 393 aa8.76□□□□□ -1.01
VPS54-204ENST00000416400 FBXO45P0C2W1 286 aa8.75□□□□□ -1.01
VPS54-204ENST00000416400 SKOR1P84550 965 aa8.75□□□□□ -1.01
VPS54-204ENST00000416400 VAC14Q08AM6 782 aa8.75□□□□□ -1.01
VPS54-204ENST00000416400 MCCD1P59942 119 aaPredicted RBP8.74□□□□□ -1.01
VPS54-204ENST00000416400 IRF5Q13568 498 aa8.74□□□□□ -1.01
VPS54-204ENST00000416400 DZIP3Q86Y13 1208 aaKnown RBP8.74□□□□□ -1.01
VPS54-204ENST00000416400 ADAM32Q8TC27 787 aa8.74□□□□□ -1.01
VPS54-204ENST00000416400 EMID1Q96A84 441 aaPredicted RBP8.74□□□□□ -1.01
VPS54-204ENST00000416400 SLC10A4Q96EP9 437 aa8.74□□□□□ -1.01
VPS54-204ENST00000416400 PCDHB9Q9Y5E1 797 aa8.74□□□□□ -1.01
VPS54-204ENST00000416400 WNT7AO00755 349 aa8.73□□□□□ -1.01
VPS54-204ENST00000416400 SOX11P35716 441 aa8.73□□□□□ -1.01
VPS54-204ENST00000416400 SEMA3FQ13275 785 aa8.73□□□□□ -1.01
VPS54-204ENST00000416400 ARID5BQ14865 1188 aa8.72□□□□□ -1.01
VPS54-204ENST00000416400 SH3RF1Q7Z6J0 888 aa8.72□□□□□ -1.01
VPS54-204ENST00000416400 CDV3Q9UKY7 258 aaKnown RBP8.72□□□□□ -1.01
VPS54-204ENST00000416400 GPR37L1O60883 481 aa8.71□□□□□ -1.02
VPS54-204ENST00000416400 TTC24A2A3L6 582 aaPredicted RBP8.7□□□□□ -1.02
VPS54-204ENST00000416400 ERFEQ4G0M1 354 aa8.7□□□□□ -1.02
VPS54-204ENST00000416400 CYP4X1Q8N118 509 aa8.7□□□□□ -1.02
VPS54-204ENST00000416400 FNBP4Q8N3X1 1017 aaPredicted RBP8.7□□□□□ -1.02
VPS54-204ENST00000416400 CCDC82Q8N4S0 544 aa8.7□□□□□ -1.02
VPS54-204ENST00000416400 MRGPRX2Q96LB1 330 aa8.7□□□□□ -1.02
VPS54-204ENST00000416400 NBPF20Q3BBV1 942 aa8.69□□□□□ -1.02
VPS54-204ENST00000416400 C4orf48Q5BLP8 95 aa8.69□□□□□ -1.02
VPS54-204ENST00000416400 VASH1Q7L8A9 365 aaPredicted RBP8.69□□□□□ -1.02
VPS54-204ENST00000416400 ZNF777Q9ULD5 760 aaPredicted RBP8.69□□□□□ -1.02
VPS54-204ENST00000416400 TRMT44Q8IYL2 757 aaKnown RBP8.68□□□□□ -1.02
VPS54-204ENST00000416400 CALR3Q96L12 384 aaKnown RBP8.68□□□□□ -1.02
VPS54-204ENST00000416400 C1QTNF2Q9BXJ5 285 aa8.68□□□□□ -1.02
VPS54-204ENST00000416400 TNFRSF10AO00220 468 aa8.67□□□□□ -1.02
VPS54-204ENST00000416400 SNIP1Q8TAD8 396 aaKnown RBP8.67□□□□□ -1.02
VPS54-204ENST00000416400 OCSTAMPQ9BR26 566 aa8.67□□□□□ -1.02
VPS54-204ENST00000416400 WASF2Q9Y6W5 498 aa8.67□□□□□ -1.02
VPS54-204ENST00000416400 POM121CA8CG34 1229 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 ALDH1A1P00352 501 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 HDGFL1Q5TGJ6 251 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 TRIM52Q96A61 297 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 PKD2L1Q9P0L9 805 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 PDZRN3Q9UPQ7 1066 aa8.66□□□□□ -1.02
VPS54-204ENST00000416400 SLFNL1Q499Z3 407 aa8.65□□□□□ -1.02
VPS54-204ENST00000416400 RNF20Q5VTR2 975 aa8.65□□□□□ -1.02
VPS54-204ENST00000416400 MPNDQ8N594 471 aa8.65□□□□□ -1.02
VPS54-204ENST00000416400 GDF9O60383 454 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms