RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 UACAQ9BZF9 1416 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 EFCAB5A4FU69 1503 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 SETD1BQ9UPS6 1966 aaKnown RBP3.91□□□□□ -1.78
MCF2-204ENST00000414978 NUDT7P0C024 238 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 TIE1P35590 1138 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 C3orf80F5H4A9 247 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 HAX1O00165 279 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 KCNA1Q09470 495 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 CERKQ8TCT0 537 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 ADGRG1Q9Y653 693 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 DISP3Q9P2K9 1392 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 RCCD1A6NED2 376 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 PPP1R12CQ9BZL4 782 aa3.91□□□□□ -1.78
MCF2-204ENST00000414978 BIN2Q9UBW5 565 aaPredicted RBP3.91□□□□□ -1.78
MCF2-204ENST00000414978 DISP1Q96F81 1524 aa3.9□□□□□ -1.78
MCF2-204ENST00000414978 C6orf132Q5T0Z8 1188 aa3.9□□□□□ -1.78
MCF2-204ENST00000414978 ANO2Q9NQ90 1003 aa3.9□□□□□ -1.78
MCF2-204ENST00000414978 MAGI2Q86UL8 1455 aa3.9□□□□□ -1.78
MCF2-204ENST00000414978 C6orf229H3BNL8 230 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 BRD1O95696 1058 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 STK32AQ8WU08 396 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 CARMIL2Q6F5E8 1435 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 OATP04181 439 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 NUDT18Q6ZVK8 323 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 CDCA7LQ96GN5 454 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 PRM3Q9NNZ6 103 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 FANCAO15360 1455 aa3.9□□□□□ -1.79
MCF2-204ENST00000414978 SERPINB4P48594 390 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 ECM1Q16610 540 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 SND1Q7KZF4 910 aaKnown RBP eCLIP3.89□□□□□ -1.79
MCF2-204ENST00000414978 JPH4Q96JJ6 628 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 PIK3CDO00329 1044 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 EVX2Q03828 476 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 GAS2L2Q8NHY3 880 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 ADAM33Q9BZ11 813 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 IRX5P78411 483 aaPredicted RBP3.89□□□□□ -1.79
MCF2-204ENST00000414978 TMEM259Q4ZIN3 620 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 RSBN1LQ6PCB5 846 aaPredicted RBP3.89□□□□□ -1.79
MCF2-204ENST00000414978 TBC1D9Q6ZT07 1266 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 PRR7Q8TB68 274 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 UCN2Q96RP3 112 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 VRTNQ9H8Y1 702 aa3.89□□□□□ -1.79
MCF2-204ENST00000414978 C3P01024 1663 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 RBM46Q8TBY0 533 aaKnown RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 ZNF594Q96JF6 807 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 POLR1AO95602 1720 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 PTPRGP23470 1445 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 PPP1R15AO75807 674 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 ABL1P00519 1130 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 CDK11BP21127 795 aaKnown RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 NR6A1Q15406 480 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 TMED8Q6PL24 325 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 GJD4Q96KN9 370 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 FAM198AQ9UFP1 575 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 CDK11AQ9UQ88 783 aaPredicted RBP3.88□□□□□ -1.79
MCF2-204ENST00000414978 FHOD3Q2V2M9 1422 aa3.88□□□□□ -1.79
MCF2-204ENST00000414978 FDX1P10109 184 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PTGER2P43116 358 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 TYW1BQ6NUM6 668 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PNMA3Q9UL41 463 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 YEATS2Q9ULM3 1422 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PER1O15534 1290 aaPredicted RBP3.87□□□□□ -1.79
MCF2-204ENST00000414978 MYT1Q01538 1121 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PROX2Q3B8N5 592 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 C8orf37Q96NL8 207 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 SEPT9Q9UHD8 586 aaPredicted RBP3.87□□□□□ -1.79
MCF2-204ENST00000414978 SYNMO15061 1565 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PHF14O94880 888 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 VAMP1P23763 118 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 TAGLNQ01995 201 aaKnown RBP3.87□□□□□ -1.79
MCF2-204ENST00000414978 SEMA3FQ13275 785 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 PPP2R2DQ66LE6 453 aa3.87□□□□□ -1.79
MCF2-204ENST00000414978 KDM4AO75164 1064 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 MTMR3Q13615 1198 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 GIPC2Q8TF65 315 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 NDUFB9Q9Y6M9 179 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 AGLP35573 1532 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 PUS10Q3MIT2 529 aaKnown RBP3.86□□□□□ -1.79
MCF2-204ENST00000414978 RSPH4AQ5TD94 716 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 MRRFQ96E11 262 aaKnown RBP3.86□□□□□ -1.79
MCF2-204ENST00000414978 PCDHGC3Q9UN70 934 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 ZFYVE16Q7Z3T8 1539 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 POGZQ7Z3K3 1410 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 COL9A1P20849 921 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 C9orf131Q5VYM1 1079 aa3.86□□□□□ -1.79
MCF2-204ENST00000414978 SUPT6HQ7KZ85 1726 aaKnown RBP3.86□□□□□ -1.79
MCF2-204ENST00000414978 PPM1GO15355 546 aaPredicted RBP3.85□□□□□ -1.79
MCF2-204ENST00000414978 ARSIQ5FYB1 569 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 TMEM164Q5U3C3 297 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 CD109Q6YHK3 1445 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 BANK1Q8NDB2 785 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 HELBQ8NG08 1087 aaPredicted RBP3.85□□□□□ -1.79
MCF2-204ENST00000414978 MKNK1Q9BUB5 465 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 TRIM34Q9BYJ4 488 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 PLA2R1Q13018 1463 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 KCNH2Q12809 1159 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 ZDHHC16Q969W1 377 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 SPATA32Q96LK8 384 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 TMEM121BQ9BXQ6 578 aaPredicted RBP3.85□□□□□ -1.79
MCF2-204ENST00000414978 TSKSQ9UJT2 592 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms