RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DIP2CQ9Y2E4 1556 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 PNPLA6Q8IY17 1366 aa7.31□□□□□ -1.24
CCDC88A-203ENST00000412148 RGS3P49796 1198 aa7.31□□□□□ -1.24
CCDC88A-203ENST00000412148 MVPQ14764 893 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-203ENST00000412148 TCP11L2Q8N4U5 519 aa7.31□□□□□ -1.24
CCDC88A-203ENST00000412148 RSPH6AQ9H0K4 717 aa7.31□□□□□ -1.24
CCDC88A-203ENST00000412148 FSD2A1L4K1 749 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 KIF3BO15066 747 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 TRHP20396 242 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 PTPRMP28827 1452 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 KIF16BQ96L93 1317 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 KNDC1Q76NI1 1749 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 MORC1Q86VD1 984 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 PIK3R4Q99570 1358 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 YEATS2Q9ULM3 1422 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 SMC5Q8IY18 1101 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 PCDHB15Q9Y5E8 787 aa7.3□□□□□ -1.24
CCDC88A-203ENST00000412148 DLG5Q8TDM6 1919 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 CD109Q6YHK3 1445 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 EVC2Q86UK5 1308 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 CD163L1Q9NR16 1453 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 EIF5BO60841 1220 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 PANK1Q8TE04 598 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 BRPF3Q9ULD4 1205 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 COG6Q9Y2V7 657 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 MON2Q7Z3U7 1717 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 CFAP65Q6ZU64 1925 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 ATAD2Q6PL18 1390 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 DDIT3P35638 169 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 SLC4A3P48751 1232 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 ZKSCAN2Q63HK3 967 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 SNX21Q969T3 373 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 PLEKHF1Q96S99 279 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 PDZRN3Q9UPQ7 1066 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 AKAP12Q02952 1782 aa7.29□□□□□ -1.24
CCDC88A-203ENST00000412148 SEC24BO95487 1268 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 PTMSP20962 102 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 ALDH1L2Q3SY69 923 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 PNNQ9H307 717 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 DDX19BQ9UMR2 479 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 MAP2P11137 1827 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 ATP7BP35670 1465 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 RLBP1P12271 317 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 CANXP27824 592 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 RBM25P49756 843 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 TBC1D2Q9BYX2 928 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 CIZ1Q9ULV3 898 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 RIMBP3CA6NJZ7 1639 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 RIMBP3BA6NNM3 1639 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 RIMBP3Q9UFD9 1639 aa7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 N4BP2Q86UW6 1770 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-203ENST00000412148 NRKQ7Z2Y5 1582 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 PTCH1Q13635 1447 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 DZIP1LQ8IYY4 767 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 CHMP4BQ9H444 224 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 LRRC7Q96NW7 1537 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 KIF24Q5T7B8 1368 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 MTHFSP49914 203 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 CHMP5Q9NZZ3 219 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 TUBGCP6Q96RT7 1819 aa7.27□□□□□ -1.25
CCDC88A-203ENST00000412148 VGFO15240 615 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 FAM135BQ49AJ0 1406 aa7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 ARHGEF40Q8TER5 1519 aa7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 ANO8Q9HCE9 1232 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 DDX11L8A8MPP1 907 aa7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 CLEC17AQ6ZS10 378 aa7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 ARHGAP45Q92619 1136 aa7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 ZNF692Q9BU19 519 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-203ENST00000412148 IBTKQ9P2D0 1353 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 ALKQ9UM73 1620 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 MCM4P33991 863 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 ATF7IPQ6VMQ6 1270 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 SLC12A5Q9H2X9 1139 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 ZBTB40Q9NUA8 1239 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 ATF5Q9Y2D1 282 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 A0A1W2PP64 1363 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 ITSN1Q15811 1721 aa7.25□□□□□ -1.25
CCDC88A-203ENST00000412148 C3P01024 1663 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 IPO8O15397 1037 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 C22orf23Q9BZE7 217 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 POGKQ9P215 609 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 TRIM35Q9UPQ4 493 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 CDK12Q9NYV4 1490 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 TMPOP42166 694 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 NUCB1Q02818 461 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 NALCNQ8IZF0 1738 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 YTHDC2Q9H6S0 1430 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 SLC52A1Q9NWF4 448 aa7.24□□□□□ -1.25
CCDC88A-203ENST00000412148 TRIM27P14373 513 aa7.23□□□□□ -1.25
CCDC88A-203ENST00000412148 MRE11P49959 708 aa7.23□□□□□ -1.25
CCDC88A-203ENST00000412148 BMP2KLQ5H9B9 411 aa7.23□□□□□ -1.25
CCDC88A-203ENST00000412148 CACNA1FO60840 1977 aa7.23□□□□□ -1.25
CCDC88A-203ENST00000412148 AGLP35573 1532 aa7.23□□□□□ -1.25
CCDC88A-203ENST00000412148 RGPD1P0DJD0 1748 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 CLCN1P35523 988 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 SKOR2Q2VWA4 1001 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 GCC1Q96CN9 775 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 GOLGA6L3A6NEY3 463 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 FCHSD2O94868 740 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 FTSJ3Q8IY81 847 aaKnown RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms