RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 F12P00748 615 aaPredicted RBP7.83□□□□□ -1.16
BRCA1-204ENST00000412061 VAC14Q08AM6 782 aa7.83□□□□□ -1.16
BRCA1-204ENST00000412061 TJAP1Q5JTD0 557 aa7.83□□□□□ -1.16
BRCA1-204ENST00000412061 ZPR1O75312 459 aa7.82□□□□□ -1.16
BRCA1-204ENST00000412061 DXOO77932 396 aaKnown RBP7.82□□□□□ -1.16
BRCA1-204ENST00000412061 ADH1BP00325 375 aa7.82□□□□□ -1.16
BRCA1-204ENST00000412061 HDGFL1Q5TGJ6 251 aa7.82□□□□□ -1.16
BRCA1-204ENST00000412061 FAM160A2Q8N612 972 aaPredicted RBP7.82□□□□□ -1.16
BRCA1-204ENST00000412061 GFRA3O60609 400 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 CCNYL3P0C7X3 344 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 CTHP32929 405 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 SOX11P35716 441 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 MTRQ99707 1265 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 MAP10Q9P2G4 905 aa7.81□□□□□ -1.16
BRCA1-204ENST00000412061 ZC3H4Q9UPT8 1303 aaKnown RBP7.81□□□□□ -1.16
BRCA1-204ENST00000412061 MMP16P51512 607 aa7.8□□□□□ -1.16
BRCA1-204ENST00000412061 NUDT12Q9BQG2 462 aa7.8□□□□□ -1.16
BRCA1-204ENST00000412061 IL21Q9HBE4 155 aa7.8□□□□□ -1.16
BRCA1-204ENST00000412061 FKBPLQ9UIM3 349 aa7.8□□□□□ -1.16
BRCA1-204ENST00000412061 TLL1O43897 1013 aa7.79□□□□□ -1.16
BRCA1-204ENST00000412061 LAPTM4AQ15012 233 aa7.79□□□□□ -1.16
BRCA1-204ENST00000412061 ADAMTS19Q8TE59 1207 aa7.79□□□□□ -1.16
BRCA1-204ENST00000412061 PRDM9Q9NQV7 894 aa7.79□□□□□ -1.16
BRCA1-204ENST00000412061 EVA1BQ9NVM1 165 aa7.79□□□□□ -1.16
BRCA1-204ENST00000412061 EIF4G2P78344 907 aaKnown RBP eCLIP7.78□□□□□ -1.16
BRCA1-204ENST00000412061 KCNH2Q12809 1159 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 NR1H3Q13133 447 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 TRAF7Q6Q0C0 670 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 ARMC2Q8NEN0 867 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 PRKD2Q9BZL6 878 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 ALG2Q9H553 416 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 ZBBXA8MT70 800 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 SEMA3FQ13275 785 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 ZNF516Q92618 1163 aa7.78□□□□□ -1.16
BRCA1-204ENST00000412061 PPP1R18Q6NYC8 613 aa7.77□□□□□ -1.17
BRCA1-204ENST00000412061 GPKOWQ92917 476 aaPredicted RBP eCLIP7.77□□□□□ -1.17
BRCA1-204ENST00000412061 SLC6A16Q9GZN6 736 aa7.77□□□□□ -1.17
BRCA1-204ENST00000412061 FBXO45P0C2W1 286 aa7.76□□□□□ -1.17
BRCA1-204ENST00000412061 PPP1R15AO75807 674 aaPredicted RBP7.75□□□□□ -1.17
BRCA1-204ENST00000412061 NBPF14Q5TI25 921 aa7.75□□□□□ -1.17
BRCA1-204ENST00000412061 GPSM3Q9Y4H4 160 aa7.75□□□□□ -1.17
BRCA1-204ENST00000412061 NRG2O14511 850 aaPredicted RBP7.74□□□□□ -1.17
BRCA1-204ENST00000412061 PTK2Q05397 1052 aa7.74□□□□□ -1.17
BRCA1-204ENST00000412061 PDXDC2PQ6P474 469 aa7.74□□□□□ -1.17
BRCA1-204ENST00000412061 CCDC24Q8N4L8 307 aa7.74□□□□□ -1.17
BRCA1-204ENST00000412061 NKX2-3Q8TAU0 364 aa7.74□□□□□ -1.17
BRCA1-204ENST00000412061 PPP1R12CQ9BZL4 782 aa7.74□□□□□ -1.17
BRCA1-204ENST00000412061 ZNF592Q92610 1267 aa7.73□□□□□ -1.17
BRCA1-204ENST00000412061 PDIA4P13667 645 aaKnown RBP7.72□□□□□ -1.17
BRCA1-204ENST00000412061 CFAP70Q5T0N1 1121 aa7.72□□□□□ -1.17
BRCA1-204ENST00000412061 UNC93B1Q9H1C4 597 aa7.72□□□□□ -1.17
BRCA1-204ENST00000412061 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.72□□□□□ -1.17
BRCA1-204ENST00000412061 V9GY48 417 aaPredicted RBP7.72□□□□□ -1.17
BRCA1-204ENST00000412061 ACIN1Q9UKV3 1341 aaKnown RBP7.71□□□□□ -1.17
BRCA1-204ENST00000412061 ZBTB7CA1YPR0 619 aa7.71□□□□□ -1.18
BRCA1-204ENST00000412061 PALM3A6NDB9 673 aaPredicted RBP7.71□□□□□ -1.18
BRCA1-204ENST00000412061 S1PR4O95977 384 aa7.71□□□□□ -1.18
BRCA1-204ENST00000412061 PBXIP1Q96AQ6 731 aa7.71□□□□□ -1.18
BRCA1-204ENST00000412061 UCN2Q96RP3 112 aa7.71□□□□□ -1.18
BRCA1-204ENST00000412061 RFX1P22670 979 aa7.7□□□□□ -1.18
BRCA1-204ENST00000412061 MCCD1P59942 119 aaPredicted RBP7.7□□□□□ -1.18
BRCA1-204ENST00000412061 TFIP11Q9UBB9 837 aaKnown RBP7.7□□□□□ -1.18
BRCA1-204ENST00000412061 CCDC9Q9Y3X0 531 aaKnown RBP7.7□□□□□ -1.18
BRCA1-204ENST00000412061 LMOD1P29536 600 aaPredicted RBP7.69□□□□□ -1.18
BRCA1-204ENST00000412061 PTCRAQ6ISU1 281 aaPredicted RBP7.69□□□□□ -1.18
BRCA1-204ENST00000412061 ARHGAP9Q9BRR9 750 aa7.69□□□□□ -1.18
BRCA1-204ENST00000412061 FCF1Q9Y324 198 aaKnown RBP7.69□□□□□ -1.18
BRCA1-204ENST00000412061 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.67□□□□□ -1.18
BRCA1-204ENST00000412061 ATP9BO43861 1147 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 TBC1D9Q6ZT07 1266 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 SH3BP5LQ7L8J4 393 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 ZBTB33Q86T24 672 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 RETREG2Q8NC44 543 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 OCSTAMPQ9BR26 566 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 PDZRN3Q9UPQ7 1066 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 PCDHB9Q9Y5E1 797 aa7.67□□□□□ -1.18
BRCA1-204ENST00000412061 MAFBQ9Y5Q3 323 aaPredicted RBP7.67□□□□□ -1.18
BRCA1-204ENST00000412061 NFATC2IPQ8NCF5 419 aa7.66□□□□□ -1.18
BRCA1-204ENST00000412061 ADAM32Q8TC27 787 aa7.66□□□□□ -1.18
BRCA1-204ENST00000412061 TRAIPQ9BWF2 469 aa7.66□□□□□ -1.18
BRCA1-204ENST00000412061 SRPK2P78362 688 aaKnown RBP7.65□□□□□ -1.18
BRCA1-204ENST00000412061 PDE4CQ08493 712 aa7.65□□□□□ -1.18
BRCA1-204ENST00000412061 BPHLQ86WA6 291 aaPredicted RBP7.65□□□□□ -1.18
BRCA1-204ENST00000412061 BAP1Q92560 729 aa7.65□□□□□ -1.18
BRCA1-204ENST00000412061 CEP126Q9P2H0 1117 aa7.65□□□□□ -1.18
BRCA1-204ENST00000412061 SKIP12755 728 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 GGCXP38435 758 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 AGERQ15109 404 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 LINC01559Q495D7 138 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 SLFNL1Q499Z3 407 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 SH3RF1Q7Z6J0 888 aa7.64□□□□□ -1.19
BRCA1-204ENST00000412061 MAGEB6P1A0A0J9YX57 407 aa7.63□□□□□ -1.19
BRCA1-204ENST00000412061 PIK3CDO00329 1044 aa7.63□□□□□ -1.19
BRCA1-204ENST00000412061 ZBTB24O43167 697 aaPredicted RBP7.63□□□□□ -1.19
BRCA1-204ENST00000412061 ZNF787Q6DD87 383 aa7.63□□□□□ -1.19
BRCA1-204ENST00000412061 DZIP3Q86Y13 1208 aaKnown RBP7.63□□□□□ -1.19
BRCA1-204ENST00000412061 ZNF511Q8NB15 262 aa7.63□□□□□ -1.19
BRCA1-204ENST00000412061 CARD14Q9BXL6 1004 aa7.63□□□□□ -1.19
BRCA1-204ENST00000412061 PPEF1O14829 653 aaPredicted RBP7.62□□□□□ -1.19
BRCA1-204ENST00000412061 CSB-PGBD3P0DP91 1061 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms