RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 NEFMP07197 916 aa12.73□□□□□ -0.37
MSH2-202ENST00000406134 DDRGK1Q96HY6 314 aa12.73□□□□□ -0.37
MSH2-202ENST00000406134 ZMYM3Q14202 1370 aa12.73□□□□□ -0.37
MSH2-202ENST00000406134 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
MSH2-202ENST00000406134 GGNBP2Q9H3C7 697 aa12.72□□□□□ -0.37
MSH2-202ENST00000406134 FAM135BQ49AJ0 1406 aa12.72□□□□□ -0.37
MSH2-202ENST00000406134 TOPAZ1Q8N9V7 1692 aa12.72□□□□□ -0.37
MSH2-202ENST00000406134 TSR2Q969E8 191 aaKnown RBP12.72□□□□□ -0.37
MSH2-202ENST00000406134 PRAM1Q96QH2 718 aa12.72□□□□□ -0.37
MSH2-202ENST00000406134 ITSN1Q15811 1721 aa12.72□□□□□ -0.37
MSH2-202ENST00000406134 ATAD2Q6PL18 1390 aa12.71□□□□□ -0.37
MSH2-202ENST00000406134 SENP3Q9H4L4 574 aaPredicted RBP12.71□□□□□ -0.37
MSH2-202ENST00000406134 ATP7BP35670 1465 aa12.71□□□□□ -0.38
MSH2-202ENST00000406134 FRAT1Q92837 279 aaPredicted RBP12.71□□□□□ -0.38
MSH2-202ENST00000406134 NFKBIBQ15653 356 aa12.7□□□□□ -0.38
MSH2-202ENST00000406134 STK26Q9P289 416 aa12.7□□□□□ -0.38
MSH2-202ENST00000406134 TMPOP42166 694 aaKnown RBP12.7□□□□□ -0.38
MSH2-202ENST00000406134 NALCNQ8IZF0 1738 aa12.7□□□□□ -0.38
MSH2-202ENST00000406134 MINK1Q8N4C8 1332 aaPredicted RBP12.7□□□□□ -0.38
MSH2-202ENST00000406134 U2AF1L5P0DN76 240 aaPredicted RBP12.69□□□□□ -0.38
MSH2-202ENST00000406134 U2AF1Q01081 240 aaKnown RBP eCLIP12.69□□□□□ -0.38
MSH2-202ENST00000406134 CPSF1Q10570 1443 aaKnown RBP12.69□□□□□ -0.38
MSH2-202ENST00000406134 CPS1P31327 1500 aa12.69□□□□□ -0.38
MSH2-202ENST00000406134 UBR1Q8IWV7 1749 aa12.69□□□□□ -0.38
MSH2-202ENST00000406134 MVPQ14764 893 aaKnown RBP12.68□□□□□ -0.38
MSH2-202ENST00000406134 ANO8Q9HCE9 1232 aaPredicted RBP12.68□□□□□ -0.38
MSH2-202ENST00000406134 RGPD1P0DJD0 1748 aa12.68□□□□□ -0.38
MSH2-202ENST00000406134 PPIP5K1Q6PFW1 1433 aa12.68□□□□□ -0.38
MSH2-202ENST00000406134 MAPK8IP3Q9UPT6 1336 aa12.68□□□□□ -0.38
MSH2-202ENST00000406134 PPM1GO15355 546 aaPredicted RBP12.68□□□□□ -0.38
MSH2-202ENST00000406134 CFAP53Q96M91 514 aa12.68□□□□□ -0.38
MSH2-202ENST00000406134 PDZRN3Q9UPQ7 1066 aa12.67□□□□□ -0.38
MSH2-202ENST00000406134 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.67□□□□□ -0.38
MSH2-202ENST00000406134 TRIM27P14373 513 aa12.67□□□□□ -0.38
MSH2-202ENST00000406134 FBLN1P23142 703 aa12.67□□□□□ -0.38
MSH2-202ENST00000406134 PEAK1Q9H792 1746 aa12.67□□□□□ -0.38
MSH2-202ENST00000406134 EXOSC9Q06265 439 aaKnown RBP12.67□□□□□ -0.38
MSH2-202ENST00000406134 RTL5Q5HYW3 569 aaPredicted RBP12.67□□□□□ -0.38
MSH2-202ENST00000406134 SSH1Q8WYL5 1049 aa12.66□□□□□ -0.38
MSH2-202ENST00000406134 SRPK2P78362 688 aaKnown RBP12.66□□□□□ -0.38
MSH2-202ENST00000406134 AAMPQ13685 434 aa12.66□□□□□ -0.38
MSH2-202ENST00000406134 CDK19Q9BWU1 502 aa12.66□□□□□ -0.38
MSH2-202ENST00000406134 RSPH6AQ9H0K4 717 aa12.65□□□□□ -0.38
MSH2-202ENST00000406134 MYH16Q9H6N6 1097 aa12.65□□□□□ -0.38
MSH2-202ENST00000406134 IL16Q14005 1332 aa12.65□□□□□ -0.38
MSH2-202ENST00000406134 RIMS2Q9UQ26 1411 aa12.64□□□□□ -0.39
MSH2-202ENST00000406134 ANTXR1Q9H6X2 564 aa12.64□□□□□ -0.39
MSH2-202ENST00000406134 PMFBP1Q8TBY8 1022 aa12.64□□□□□ -0.39
MSH2-202ENST00000406134 CABP1Q9NZU7 370 aa12.64□□□□□ -0.39
MSH2-202ENST00000406134 CDK12Q9NYV4 1490 aaPredicted RBP12.64□□□□□ -0.39
MSH2-202ENST00000406134 CT47B1P0C2W7 299 aaPredicted RBP12.64□□□□□ -0.39
MSH2-202ENST00000406134 METP08581 1390 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 FMN2Q9NZ56 1722 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 CANXP27824 592 aaKnown RBP12.63□□□□□ -0.39
MSH2-202ENST00000406134 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 WAPLQ7Z5K2 1190 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 TECPR2O15040 1411 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 TBC1D32Q96NH3 1257 aa12.63□□□□□ -0.39
MSH2-202ENST00000406134 MARF1Q9Y4F3 1742 aaKnown RBP12.62□□□□□ -0.39
MSH2-202ENST00000406134 FRAT2O75474 233 aaPredicted RBP12.62□□□□□ -0.39
MSH2-202ENST00000406134 ZKSCAN2Q63HK3 967 aa12.62□□□□□ -0.39
MSH2-202ENST00000406134 DZIP1LQ8IYY4 767 aaKnown RBP12.62□□□□□ -0.39
MSH2-202ENST00000406134 IL27Q8NEV9 243 aa12.62□□□□□ -0.39
MSH2-202ENST00000406134 HDAC1Q13547 482 aaPredicted RBP12.61□□□□□ -0.39
MSH2-202ENST00000406134 RIMS1Q86UR5 1692 aaKnown RBP12.61□□□□□ -0.39
MSH2-202ENST00000406134 U2SURPO15042 1029 aaKnown RBP12.61□□□□□ -0.39
MSH2-202ENST00000406134 PHACTR3Q96KR7 559 aa12.61□□□□□ -0.39
MSH2-202ENST00000406134 NOB1Q9ULX3 412 aaKnown RBP12.61□□□□□ -0.39
MSH2-202ENST00000406134 PIK3R4Q99570 1358 aa12.61□□□□□ -0.39
MSH2-202ENST00000406134 PTCH1Q13635 1447 aa12.61□□□□□ -0.39
MSH2-202ENST00000406134 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
MSH2-202ENST00000406134 TERF2IPQ9NYB0 399 aa12.61□□□□□ -0.39
MSH2-202ENST00000406134 EDC4Q6P2E9 1401 aaKnown RBP12.6□□□□□ -0.39
MSH2-202ENST00000406134 ATF7IPQ6VMQ6 1270 aa12.6□□□□□ -0.39
MSH2-202ENST00000406134 RGPD8O14715 1765 aaPredicted RBP12.6□□□□□ -0.39
MSH2-202ENST00000406134 TMEM57Q8N5G2 664 aa12.6□□□□□ -0.39
MSH2-202ENST00000406134 TUBGCP6Q96RT7 1819 aa12.6□□□□□ -0.39
MSH2-202ENST00000406134 DIAPH1O60610 1272 aaKnown RBP12.6□□□□□ -0.39
MSH2-202ENST00000406134 RIPK4P57078 832 aa12.6□□□□□ -0.39
MSH2-202ENST00000406134 ZRANB1Q9UGI0 708 aa12.59□□□□□ -0.39
MSH2-202ENST00000406134 BRPF1P55201 1214 aaPredicted RBP12.59□□□□□ -0.39
MSH2-202ENST00000406134 SMC5Q8IY18 1101 aa12.59□□□□□ -0.39
MSH2-202ENST00000406134 SMC4Q9NTJ3 1288 aa12.59□□□□□ -0.39
MSH2-202ENST00000406134 NCKAP5LQ9HCH0 1330 aa12.58□□□□□ -0.4
MSH2-202ENST00000406134 IL13P35225 146 aa12.58□□□□□ -0.4
MSH2-202ENST00000406134 GSE1Q14687 1217 aa12.58□□□□□ -0.4
MSH2-202ENST00000406134 POGKQ9P215 609 aa12.58□□□□□ -0.4
MSH2-202ENST00000406134 ZNF853P0CG23 659 aa12.57□□□□□ -0.4
MSH2-202ENST00000406134 AATKQ6ZMQ8 1374 aa12.57□□□□□ -0.4
MSH2-202ENST00000406134 RWDD1Q9H446 243 aaPredicted RBP12.57□□□□□ -0.4
MSH2-202ENST00000406134 FCHSD2O94868 740 aa12.57□□□□□ -0.4
MSH2-202ENST00000406134 EMILIN1Q9Y6C2 1016 aa12.57□□□□□ -0.4
MSH2-202ENST00000406134 PRKAR2BP31323 418 aa12.56□□□□□ -0.4
MSH2-202ENST00000406134 TBC1D2Q9BYX2 928 aa12.56□□□□□ -0.4
MSH2-202ENST00000406134 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.56□□□□□ -0.4
MSH2-202ENST00000406134 TSPYL6Q8N831 410 aa12.56□□□□□ -0.4
MSH2-202ENST00000406134 THUMPD2Q9BTF0 503 aaKnown RBP12.56□□□□□ -0.4
MSH2-202ENST00000406134 PRR36Q9H6K5 1346 aa12.56□□□□□ -0.4
MSH2-202ENST00000406134 RGS12O14924 1447 aa12.55□□□□□ -0.4
MSH2-202ENST00000406134 CYB5RLQ6IPT4 315 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms