RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 SAFB2Q14151 953 aaKnown RBP eCLIP13.66□□□□□ -0.22
CLIP4-204ENST00000404424 GGNBP2Q9H3C7 697 aa13.66□□□□□ -0.22
CLIP4-204ENST00000404424 SMC4Q9NTJ3 1288 aa13.66□□□□□ -0.22
CLIP4-204ENST00000404424 TRIM35Q9UPQ4 493 aa13.66□□□□□ -0.22
CLIP4-204ENST00000404424 EXOSC9Q06265 439 aaKnown RBP13.65□□□□□ -0.22
CLIP4-204ENST00000404424 HDAC1Q13547 482 aaPredicted RBP13.65□□□□□ -0.22
CLIP4-204ENST00000404424 TMEM131LA2VDJ0 1609 aa13.65□□□□□ -0.22
CLIP4-204ENST00000404424 IL27Q8NEV9 243 aa13.65□□□□□ -0.22
CLIP4-204ENST00000404424 YTHDC2Q9H6S0 1430 aaKnown RBP13.64□□□□□ -0.23
CLIP4-204ENST00000404424 RICTORQ6R327 1708 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 PNPLA6Q8IY17 1366 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 HDGFL2Q7Z4V5 671 aaPredicted RBP13.64□□□□□ -0.23
CLIP4-204ENST00000404424 TSR2Q969E8 191 aaKnown RBP13.64□□□□□ -0.23
CLIP4-204ENST00000404424 STK26Q9P289 416 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 CD163L1Q9NR16 1453 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 TRIM27P14373 513 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 ATF7IPQ6VMQ6 1270 aa13.64□□□□□ -0.23
CLIP4-204ENST00000404424 PREX1Q8TCU6 1659 aa13.63□□□□□ -0.23
CLIP4-204ENST00000404424 DIAPH1O60610 1272 aaKnown RBP13.63□□□□□ -0.23
CLIP4-204ENST00000404424 SSH1Q8WYL5 1049 aa13.63□□□□□ -0.23
CLIP4-204ENST00000404424 POGKQ9P215 609 aa13.63□□□□□ -0.23
CLIP4-204ENST00000404424 PRAM1Q96QH2 718 aa13.63□□□□□ -0.23
CLIP4-204ENST00000404424 KIF16BQ96L93 1317 aa13.62□□□□□ -0.23
CLIP4-204ENST00000404424 IPO8O15397 1037 aaKnown RBP13.62□□□□□ -0.23
CLIP4-204ENST00000404424 RIPK4P57078 832 aa13.62□□□□□ -0.23
CLIP4-204ENST00000404424 MINK1Q8N4C8 1332 aaPredicted RBP13.61□□□□□ -0.23
CLIP4-204ENST00000404424 MYO5BQ9ULV0 1848 aa13.61□□□□□ -0.23
CLIP4-204ENST00000404424 FCHSD2O94868 740 aa13.61□□□□□ -0.23
CLIP4-204ENST00000404424 ALDH1L2Q3SY69 923 aa13.61□□□□□ -0.23
CLIP4-204ENST00000404424 ITPRIPQ8IWB1 547 aa13.61□□□□□ -0.23
CLIP4-204ENST00000404424 ZNF428Q96B54 188 aa13.61□□□□□ -0.23
CLIP4-204ENST00000404424 SMC5Q8IY18 1101 aa13.6□□□□□ -0.23
CLIP4-204ENST00000404424 ANTXR1Q9H6X2 564 aa13.6□□□□□ -0.23
CLIP4-204ENST00000404424 CDC42BPGQ6DT37 1551 aa13.6□□□□□ -0.23
CLIP4-204ENST00000404424 YEATS2Q9ULM3 1422 aa13.6□□□□□ -0.23
CLIP4-204ENST00000404424 ARHGEF40Q8TER5 1519 aa13.6□□□□□ -0.23
CLIP4-204ENST00000404424 NOB1Q9ULX3 412 aaKnown RBP13.59□□□□□ -0.23
CLIP4-204ENST00000404424 BRPF1P55201 1214 aaPredicted RBP13.59□□□□□ -0.23
CLIP4-204ENST00000404424 CDK19Q9BWU1 502 aa13.59□□□□□ -0.23
CLIP4-204ENST00000404424 TBC1D2Q9BYX2 928 aa13.59□□□□□ -0.23
CLIP4-204ENST00000404424 ALKQ9UM73 1620 aa13.59□□□□□ -0.23
CLIP4-204ENST00000404424 SLKQ9H2G2 1235 aaPredicted RBP13.58□□□□□ -0.24
CLIP4-204ENST00000404424 ZBTB40Q9NUA8 1239 aa13.58□□□□□ -0.24
CLIP4-204ENST00000404424 KIF20BQ96Q89 1820 aa13.58□□□□□ -0.24
CLIP4-204ENST00000404424 PPIP5K1Q6PFW1 1433 aa13.57□□□□□ -0.24
CLIP4-204ENST00000404424 TMEM57Q8N5G2 664 aa13.57□□□□□ -0.24
CLIP4-204ENST00000404424 CABP1Q9NZU7 370 aa13.57□□□□□ -0.24
CLIP4-204ENST00000404424 DLC1Q96QB1 1528 aa13.57□□□□□ -0.24
CLIP4-204ENST00000404424 C22orf23Q9BZE7 217 aa13.56□□□□□ -0.24
CLIP4-204ENST00000404424 CHMP4BQ9H444 224 aaKnown RBP13.56□□□□□ -0.24
CLIP4-204ENST00000404424 BRPF3Q9ULD4 1205 aa13.56□□□□□ -0.24
CLIP4-204ENST00000404424 ATP7BP35670 1465 aa13.56□□□□□ -0.24
CLIP4-204ENST00000404424 PPP6R1Q9UPN7 881 aa13.56□□□□□ -0.24
CLIP4-204ENST00000404424 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
CLIP4-204ENST00000404424 CALD1Q05682 793 aaKnown RBP13.55□□□□□ -0.24
CLIP4-204ENST00000404424 RSPH6AQ9H0K4 717 aa13.55□□□□□ -0.24
CLIP4-204ENST00000404424 LRRC7Q96NW7 1537 aa13.54□□□□□ -0.24
CLIP4-204ENST00000404424 POLKQ9UBT6 870 aa13.54□□□□□ -0.24
CLIP4-204ENST00000404424 STAG3Q9UJ98 1225 aa13.54□□□□□ -0.24
CLIP4-204ENST00000404424 NUCB1Q02818 461 aa13.53□□□□□ -0.24
CLIP4-204ENST00000404424 ARHGAP45Q92619 1136 aa13.53□□□□□ -0.24
CLIP4-204ENST00000404424 PRKAR2BP31323 418 aa13.53□□□□□ -0.24
CLIP4-204ENST00000404424 MFAP1P55081 439 aaKnown RBP13.53□□□□□ -0.24
CLIP4-204ENST00000404424 NFE2L2Q16236 605 aa13.52□□□□□ -0.24
CLIP4-204ENST00000404424 FBXO31Q5XUX0 539 aaPredicted RBP13.52□□□□□ -0.24
CLIP4-204ENST00000404424 RTN4Q9NQC3 1192 aaKnown RBP13.52□□□□□ -0.24
CLIP4-204ENST00000404424 L1TD1Q5T7N2 865 aaKnown RBP13.51□□□□□ -0.25
CLIP4-204ENST00000404424 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
CLIP4-204ENST00000404424 CHMP5Q9NZZ3 219 aa13.51□□□□□ -0.25
CLIP4-204ENST00000404424 PIK3R4Q99570 1358 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 REREQ9P2R6 1566 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 GNAI1P63096 354 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 GCC1Q96CN9 775 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 IFT57Q9NWB7 429 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 RBM25P49756 843 aaKnown RBP13.5□□□□□ -0.25
CLIP4-204ENST00000404424 CHD1LQ86WJ1 897 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLIP4-204ENST00000404424 PTCH1Q13635 1447 aa13.5□□□□□ -0.25
CLIP4-204ENST00000404424 EDC4Q6P2E9 1401 aaKnown RBP13.5□□□□□ -0.25
CLIP4-204ENST00000404424 VAMP4O75379 141 aa13.49□□□□□ -0.25
CLIP4-204ENST00000404424 CPSF1Q10570 1443 aaKnown RBP13.49□□□□□ -0.25
CLIP4-204ENST00000404424 AATKQ6ZMQ8 1374 aa13.49□□□□□ -0.25
CLIP4-204ENST00000404424 AGLP35573 1532 aa13.49□□□□□ -0.25
CLIP4-204ENST00000404424 A2ML1A8K2U0 1454 aa13.49□□□□□ -0.25
CLIP4-204ENST00000404424 ZBTB7BO15156 539 aaPredicted RBP13.49□□□□□ -0.25
CLIP4-204ENST00000404424 HSCBQ8IWL3 235 aa13.49□□□□□ -0.25
CLIP4-204ENST00000404424 MRPL50Q8N5N7 158 aaKnown RBP13.49□□□□□ -0.25
CLIP4-204ENST00000404424 LMOD3Q0VAK6 560 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 BMP2KLQ5H9B9 411 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 CDK12Q9NYV4 1490 aaPredicted RBP13.48□□□□□ -0.25
CLIP4-204ENST00000404424 MAP2P11137 1827 aaKnown RBP13.48□□□□□ -0.25
CLIP4-204ENST00000404424 RIMS2Q9UQ26 1411 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 ZNF853P0CG23 659 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 MCM4P33991 863 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 IL13P35225 146 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 SNX21Q969T3 373 aa13.48□□□□□ -0.25
CLIP4-204ENST00000404424 SPATA31D1Q6ZQQ2 1576 aa13.47□□□□□ -0.25
CLIP4-204ENST00000404424 SETD1AO15047 1707 aaKnown RBP13.47□□□□□ -0.25
CLIP4-204ENST00000404424 WAPLQ7Z5K2 1190 aa13.47□□□□□ -0.25
CLIP4-204ENST00000404424 PHACTR3Q96KR7 559 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms