RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 SLIT1O75093 1534 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 MTHFSP49914 203 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 TNNQ9UQP3 1299 aa23.55■■□□□ 1.36
PCDHA1-202ENST00000394633 METP08581 1390 aa23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 FRAT2O75474 233 aaPredicted RBP23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 ARHGAP23Q9P227 1491 aa23.54■■□□□ 1.36
PCDHA1-202ENST00000394633 RLBP1P12271 317 aa23.53■■□□□ 1.36
PCDHA1-202ENST00000394633 TXNDC2Q86VQ3 553 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 CCDC27Q2M243 656 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 PCDHB15Q9Y5E8 787 aa23.52■■□□□ 1.36
PCDHA1-202ENST00000394633 PMFBP1Q8TBY8 1022 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 RTN4Q9NQC3 1192 aaKnown RBP23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 ADAMTS13Q76LX8 1427 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 AAMPQ13685 434 aa23.51■■□□□ 1.35
PCDHA1-202ENST00000394633 TULP4Q9NRJ4 1543 aa23.5■■□□□ 1.35
PCDHA1-202ENST00000394633 ADGRB2O60241 1585 aa23.5■■□□□ 1.35
PCDHA1-202ENST00000394633 HDGFP51858 240 aaKnown RBP23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 CFAP53Q96M91 514 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 BCL2L13Q9BXK5 485 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 PRAM1Q96QH2 718 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 PLEKHG1Q9ULL1 1385 aa23.49■■□□□ 1.35
PCDHA1-202ENST00000394633 THEMISQ8N1K5 641 aaPredicted RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 ZNF142P52746 1687 aaPredicted RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 SETD1BQ9UPS6 1966 aaKnown RBP23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 BRPF3Q9ULD4 1205 aa23.48■■□□□ 1.35
PCDHA1-202ENST00000394633 ANKRD36BQ8N2N9 1353 aa23.46■■□□□ 1.35
PCDHA1-202ENST00000394633 EID1Q9Y6B2 187 aa23.45■■□□□ 1.35
PCDHA1-202ENST00000394633 NSD2O96028 1365 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 NCBP3Q53F19 620 aaKnown RBP23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 SLC26A8Q96RN1 970 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 PDZRN3Q9UPQ7 1066 aa23.45■■□□□ 1.34
PCDHA1-202ENST00000394633 PUS7Q96PZ0 661 aaKnown RBP23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 EVC2Q86UK5 1308 aa23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 WAPLQ7Z5K2 1190 aa23.44■■□□□ 1.34
PCDHA1-202ENST00000394633 MYH16Q9H6N6 1097 aa23.43■■□□□ 1.34
PCDHA1-202ENST00000394633 MED14O60244 1454 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 MINK1Q8N4C8 1332 aaPredicted RBP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 U2AF1L5P0DN76 240 aaPredicted RBP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 U2AF1Q01081 240 aaKnown RBP eCLIP23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 POGKQ9P215 609 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 DLC1Q96QB1 1528 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 ABCC11Q96J66 1382 aa23.42■■□□□ 1.34
PCDHA1-202ENST00000394633 BECN1Q14457 450 aa23.41■■□□□ 1.34
PCDHA1-202ENST00000394633 RWDD1Q9H446 243 aaPredicted RBP23.4■■□□□ 1.34
PCDHA1-202ENST00000394633 KNDC1Q76NI1 1749 aa23.39■■□□□ 1.34
PCDHA1-202ENST00000394633 MVPQ14764 893 aaKnown RBP23.39■■□□□ 1.34
PCDHA1-202ENST00000394633 CABP2Q9NPB3 220 aa23.39■■□□□ 1.33
PCDHA1-202ENST00000394633 PTPRUQ92729 1446 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 TBC1D32Q96NH3 1257 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 TECPR2O15040 1411 aa23.37■■□□□ 1.33
PCDHA1-202ENST00000394633 ZKSCAN2Q63HK3 967 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 CPS1P31327 1500 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 ANKRD26Q9UPS8 1709 aa23.36■■□□□ 1.33
PCDHA1-202ENST00000394633 ROBO2Q9HCK4 1378 aa23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 TSR2Q969E8 191 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 COL3A1P02461 1466 aaPredicted RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 DZIP1LQ8IYY4 767 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 SLKQ9H2G2 1235 aaPredicted RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 UPF2Q9HAU5 1272 aaKnown RBP23.35■■□□□ 1.33
PCDHA1-202ENST00000394633 A0A1W2PP64 1363 aa23.34■■□□□ 1.33
PCDHA1-202ENST00000394633 CT47B1P0C2W7 299 aaPredicted RBP23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 PLEKHF1Q96S99 279 aa23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 ANTXR1Q9H6X2 564 aa23.33■■□□□ 1.33
PCDHA1-202ENST00000394633 FTSJ3Q8IY81 847 aaKnown RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 SRPK2P78362 688 aaKnown RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 ANO8Q9HCE9 1232 aaPredicted RBP23.32■■□□□ 1.32
PCDHA1-202ENST00000394633 EXOSC9Q06265 439 aaKnown RBP23.31■■□□□ 1.32
PCDHA1-202ENST00000394633 TBX22Q9Y458 520 aa23.31■■□□□ 1.32
PCDHA1-202ENST00000394633 FAM135BQ49AJ0 1406 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TMPOP42166 694 aaKnown RBP23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TBC1D2Q9BYX2 928 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 TRIM35Q9UPQ4 493 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 DIP2AQ14689 1571 aa23.3■■□□□ 1.32
PCDHA1-202ENST00000394633 KDM4FA0A1W2PPD8 638 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 ANKLE2Q86XL3 938 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 SMC4Q9NTJ3 1288 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 U2SURPO15042 1029 aaKnown RBP23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 GGNBP2Q9H3C7 697 aa23.29■■□□□ 1.32
PCDHA1-202ENST00000394633 TRIM27P14373 513 aa23.28■■□□□ 1.32
PCDHA1-202ENST00000394633 CDK19Q9BWU1 502 aa23.28■■□□□ 1.32
PCDHA1-202ENST00000394633 SSH1Q8WYL5 1049 aa23.27■■□□□ 1.32
PCDHA1-202ENST00000394633 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.27■■□□□ 1.31
PCDHA1-202ENST00000394633 AMOTL2Q9Y2J4 779 aa23.27■■□□□ 1.31
PCDHA1-202ENST00000394633 HDAC1Q13547 482 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 XRN1Q8IZH2 1706 aaKnown RBP23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 CD163L1Q9NR16 1453 aa23.25■■□□□ 1.31
PCDHA1-202ENST00000394633 ATF7IPQ6VMQ6 1270 aa23.24■■□□□ 1.31
PCDHA1-202ENST00000394633 SIRT1Q96EB6 747 aa23.24■■□□□ 1.31
PCDHA1-202ENST00000394633 IL16Q14005 1332 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 DDX19BQ9UMR2 479 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 FYB1O15117 783 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 ITPRIPQ8IWB1 547 aa23.23■■□□□ 1.31
PCDHA1-202ENST00000394633 KIF20BQ96Q89 1820 aa23.22■■□□□ 1.31
PCDHA1-202ENST00000394633 ATAD2Q6PL18 1390 aa23.22■■□□□ 1.31
PCDHA1-202ENST00000394633 NCKAP5LQ9HCH0 1330 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 NOB1Q9ULX3 412 aaKnown RBP23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 WASLO00401 505 aaPredicted RBP23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 KCNA6P17658 529 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 PTCH1Q13635 1447 aa23.21■■□□□ 1.31
PCDHA1-202ENST00000394633 RIPK4P57078 832 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms