RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 BCAR3O75815 825 aa11.78□□□□□ -0.52
TDP1-202ENST00000393452 NEUROD2Q15784 382 aa11.78□□□□□ -0.52
TDP1-202ENST00000393452 AKAP12Q02952 1782 aa11.78□□□□□ -0.52
TDP1-202ENST00000393452 KDM2BQ8NHM5 1336 aa11.78□□□□□ -0.52
TDP1-202ENST00000393452 MAP2P11137 1827 aaKnown RBP11.78□□□□□ -0.52
TDP1-202ENST00000393452 SLIT1O75093 1534 aa11.77□□□□□ -0.52
TDP1-202ENST00000393452 LTKP29376 864 aa11.77□□□□□ -0.52
TDP1-202ENST00000393452 ROBO2Q9HCK4 1378 aa11.77□□□□□ -0.52
TDP1-202ENST00000393452 ARHGAP23Q9P227 1491 aa11.77□□□□□ -0.52
TDP1-202ENST00000393452 MSH5O43196 834 aa11.77□□□□□ -0.53
TDP1-202ENST00000393452 NUDT16Q96DE0 195 aaKnown RBP11.77□□□□□ -0.53
TDP1-202ENST00000393452 CCDC61Q9Y6R9 512 aa11.77□□□□□ -0.53
TDP1-202ENST00000393452 DIAPH1O60610 1272 aaKnown RBP11.76□□□□□ -0.53
TDP1-202ENST00000393452 PDE3AQ14432 1141 aa11.76□□□□□ -0.53
TDP1-202ENST00000393452 FER1L4A9Z1Z3 1794 aa11.76□□□□□ -0.53
TDP1-202ENST00000393452 MS4A1P11836 297 aa11.76□□□□□ -0.53
TDP1-202ENST00000393452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.76□□□□□ -0.53
TDP1-202ENST00000393452 ITSN1Q15811 1721 aa11.75□□□□□ -0.53
TDP1-202ENST00000393452 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.75□□□□□ -0.53
TDP1-202ENST00000393452 U2SURPO15042 1029 aaKnown RBP11.75□□□□□ -0.53
TDP1-202ENST00000393452 TMPOP42166 694 aaKnown RBP11.75□□□□□ -0.53
TDP1-202ENST00000393452 CEBPAP49715 358 aaPredicted RBP11.75□□□□□ -0.53
TDP1-202ENST00000393452 POLKQ9UBT6 870 aa11.75□□□□□ -0.53
TDP1-202ENST00000393452 AATKQ6ZMQ8 1374 aa11.75□□□□□ -0.53
TDP1-202ENST00000393452 RARSP54136 660 aaKnown RBP11.75□□□□□ -0.53
TDP1-202ENST00000393452 MYH16Q9H6N6 1097 aa11.75□□□□□ -0.53
TDP1-202ENST00000393452 PRR36Q9H6K5 1346 aa11.74□□□□□ -0.53
TDP1-202ENST00000393452 CENPQQ7L2Z9 268 aaPredicted RBP11.74□□□□□ -0.53
TDP1-202ENST00000393452 TOPAZ1Q8N9V7 1692 aa11.74□□□□□ -0.53
TDP1-202ENST00000393452 PNNQ9H307 717 aaKnown RBP11.74□□□□□ -0.53
TDP1-202ENST00000393452 TRIM35Q9UPQ4 493 aa11.74□□□□□ -0.53
TDP1-202ENST00000393452 CDK12Q9NYV4 1490 aaPredicted RBP11.73□□□□□ -0.53
TDP1-202ENST00000393452 FCHSD2O94868 740 aa11.73□□□□□ -0.53
TDP1-202ENST00000393452 ANP32EQ9BTT0 268 aa11.73□□□□□ -0.53
TDP1-202ENST00000393452 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
TDP1-202ENST00000393452 PTPRUQ92729 1446 aa11.73□□□□□ -0.53
TDP1-202ENST00000393452 IL16Q14005 1332 aa11.73□□□□□ -0.53
TDP1-202ENST00000393452 CT47B1P0C2W7 299 aaPredicted RBP11.72□□□□□ -0.53
TDP1-202ENST00000393452 LRRC7Q96NW7 1537 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 NCKAP5LQ9HCH0 1330 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 MAPK8IP3Q9UPT6 1336 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 NME9Q86XW9 330 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 EID1Q9Y6B2 187 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 NRKQ7Z2Y5 1582 aa11.72□□□□□ -0.53
TDP1-202ENST00000393452 FBLN1P23142 703 aa11.71□□□□□ -0.54
TDP1-202ENST00000393452 TBX22Q9Y458 520 aa11.71□□□□□ -0.54
TDP1-202ENST00000393452 DIP2AQ14689 1571 aa11.71□□□□□ -0.54
TDP1-202ENST00000393452 ILDR1Q86SU0 546 aaPredicted RBP11.7□□□□□ -0.54
TDP1-202ENST00000393452 RSPH6AQ9H0K4 717 aa11.7□□□□□ -0.54
TDP1-202ENST00000393452 PTCH1Q13635 1447 aa11.7□□□□□ -0.54
TDP1-202ENST00000393452 PLEKHG3A1L390 1219 aa11.7□□□□□ -0.54
TDP1-202ENST00000393452 BACH2Q9BYV9 841 aa11.7□□□□□ -0.54
TDP1-202ENST00000393452 PDE4AP27815 886 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 AAMPQ13685 434 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 THEMISQ8N1K5 641 aaPredicted RBP11.69□□□□□ -0.54
TDP1-202ENST00000393452 COG3Q96JB2 828 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 SLC26A8Q96RN1 970 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 ZRANB1Q9UGI0 708 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 EMILIN1Q9Y6C2 1016 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 IL13P35225 146 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 RIPK4P57078 832 aa11.69□□□□□ -0.54
TDP1-202ENST00000393452 PANK1Q8TE04 598 aa11.68□□□□□ -0.54
TDP1-202ENST00000393452 KDM4FA0A1W2PPD8 638 aa11.68□□□□□ -0.54
TDP1-202ENST00000393452 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
TDP1-202ENST00000393452 CANXP27824 592 aaKnown RBP11.68□□□□□ -0.54
TDP1-202ENST00000393452 CLUAP1Q96AJ1 413 aa11.68□□□□□ -0.54
TDP1-202ENST00000393452 XRN1Q8IZH2 1706 aaKnown RBP11.67□□□□□ -0.54
TDP1-202ENST00000393452 PRKAR2BP31323 418 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 TSR2Q969E8 191 aaKnown RBP11.67□□□□□ -0.54
TDP1-202ENST00000393452 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 COG6Q9Y2V7 657 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 NALCNQ8IZF0 1738 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 OVOS2A0A0J9YW53 1432 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 USP6P35125 1406 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 OVOS2Q6IE36 1432 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 SKAP1Q86WV1 359 aa11.67□□□□□ -0.54
TDP1-202ENST00000393452 FRAT1Q92837 279 aaPredicted RBP11.67□□□□□ -0.54
TDP1-202ENST00000393452 ACEP12821 1306 aa11.66□□□□□ -0.54
TDP1-202ENST00000393452 TTC21BQ7Z4L5 1316 aa11.66□□□□□ -0.54
TDP1-202ENST00000393452 SSH2Q76I76 1423 aa11.66□□□□□ -0.54
TDP1-202ENST00000393452 RLBP1P12271 317 aa11.66□□□□□ -0.54
TDP1-202ENST00000393452 ANP32AP39687 249 aaKnown RBP11.65□□□□□ -0.54
TDP1-202ENST00000393452 EXOSC9Q06265 439 aaKnown RBP11.65□□□□□ -0.54
TDP1-202ENST00000393452 NFE2L2Q16236 605 aa11.65□□□□□ -0.54
TDP1-202ENST00000393452 PHACTR3Q96KR7 559 aa11.65□□□□□ -0.54
TDP1-202ENST00000393452 BCL2L13Q9BXK5 485 aa11.65□□□□□ -0.54
TDP1-202ENST00000393452 CEP170BQ9Y4F5 1589 aaPredicted RBP11.65□□□□□ -0.54
TDP1-202ENST00000393452 IGHDP01880 384 aa11.64□□□□□ -0.55
TDP1-202ENST00000393452 NEFMP07197 916 aa11.64□□□□□ -0.55
TDP1-202ENST00000393452 RRS1Q15050 365 aaKnown RBP11.64□□□□□ -0.55
TDP1-202ENST00000393452 RIMS1Q86UR5 1692 aaKnown RBP11.64□□□□□ -0.55
TDP1-202ENST00000393452 DLG5Q8TDM6 1919 aa11.64□□□□□ -0.55
TDP1-202ENST00000393452 USP31Q70CQ4 1352 aa11.64□□□□□ -0.55
TDP1-202ENST00000393452 PIK3R4Q99570 1358 aa11.64□□□□□ -0.55
TDP1-202ENST00000393452 HMOX1P09601 288 aa11.63□□□□□ -0.55
TDP1-202ENST00000393452 ZKSCAN2Q63HK3 967 aa11.63□□□□□ -0.55
TDP1-202ENST00000393452 IPO9Q96P70 1041 aaKnown RBP11.63□□□□□ -0.55
TDP1-202ENST00000393452 TNNQ9UQP3 1299 aa11.63□□□□□ -0.55
TDP1-202ENST00000393452 RGPD8O14715 1765 aaPredicted RBP11.63□□□□□ -0.55
TDP1-202ENST00000393452 PLPPR3Q6T4P5 718 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms