RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 TCP11L2Q8N4U5 519 aa30.19■■■□□ 2.42
VPS16-201ENST00000380443 NPHP4O75161 1426 aaPredicted RBP30.19■■■□□ 2.42
VPS16-201ENST00000380443 EDC4Q6P2E9 1401 aaKnown RBP30.19■■■□□ 2.42
VPS16-201ENST00000380443 COL3A1P02461 1466 aaPredicted RBP30.19■■■□□ 2.42
VPS16-201ENST00000380443 PNPLA6Q8IY17 1366 aa30.18■■■□□ 2.42
VPS16-201ENST00000380443 PNNQ9H307 717 aaKnown RBP30.18■■■□□ 2.42
VPS16-201ENST00000380443 PPIP5K1Q6PFW1 1433 aa30.16■■■□□ 2.42
VPS16-201ENST00000380443 U2AF1L5P0DN76 240 aaPredicted RBP30.16■■■□□ 2.42
VPS16-201ENST00000380443 U2AF1Q01081 240 aaKnown RBP eCLIP30.16■■■□□ 2.42
VPS16-201ENST00000380443 CCDC61Q9Y6R9 512 aa30.16■■■□□ 2.42
VPS16-201ENST00000380443 ADGRB2O60241 1585 aa30.16■■■□□ 2.42
VPS16-201ENST00000380443 CDC42BPGQ6DT37 1551 aa30.15■■■□□ 2.42
VPS16-201ENST00000380443 NUDT16Q96DE0 195 aaKnown RBP30.14■■■□□ 2.42
VPS16-201ENST00000380443 ZNF692Q9BU19 519 aaPredicted RBP30.13■■■□□ 2.41
VPS16-201ENST00000380443 SPINK5Q9NQ38 1064 aaPredicted RBP30.13■■■□□ 2.41
VPS16-201ENST00000380443 PLIN1O60240 522 aa30.12■■■□□ 2.41
VPS16-201ENST00000380443 CRBNQ96SW2 442 aa30.1■■■□□ 2.41
VPS16-201ENST00000380443 TBX22Q9Y458 520 aa30.1■■■□□ 2.41
VPS16-201ENST00000380443 DIP2AQ14689 1571 aa30.09■■■□□ 2.41
VPS16-201ENST00000380443 DIAPH1O60610 1272 aaKnown RBP30.09■■■□□ 2.41
VPS16-201ENST00000380443 ROBO2Q9HCK4 1378 aa30.08■■■□□ 2.41
VPS16-201ENST00000380443 MON2Q7Z3U7 1717 aa30.08■■■□□ 2.41
VPS16-201ENST00000380443 AATKQ6ZMQ8 1374 aa30.07■■■□□ 2.4
VPS16-201ENST00000380443 PLEKHF1Q96S99 279 aa30.06■■■□□ 2.4
VPS16-201ENST00000380443 MYH16Q9H6N6 1097 aa30.06■■■□□ 2.4
VPS16-201ENST00000380443 FANCIQ9NVI1 1328 aa30.05■■■□□ 2.4
VPS16-201ENST00000380443 AKAP12Q02952 1782 aa30.05■■■□□ 2.4
VPS16-201ENST00000380443 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.03■■■□□ 2.4
VPS16-201ENST00000380443 ITSN1Q15811 1721 aa30.03■■■□□ 2.4
VPS16-201ENST00000380443 U2SURPO15042 1029 aaKnown RBP30.03■■■□□ 2.4
VPS16-201ENST00000380443 PTCH1Q13635 1447 aa30.02■■■□□ 2.4
VPS16-201ENST00000380443 MAPK8IP3Q9UPT6 1336 aa30.02■■■□□ 2.4
VPS16-201ENST00000380443 RRP7AQ9Y3A4 280 aaKnown RBP30.01■■■□□ 2.4
VPS16-201ENST00000380443 FCHSD2O94868 740 aa30.01■■■□□ 2.39
VPS16-201ENST00000380443 CT47B1P0C2W7 299 aaPredicted RBP30.01■■■□□ 2.39
VPS16-201ENST00000380443 PDE3AQ14432 1141 aa30.01■■■□□ 2.39
VPS16-201ENST00000380443 NEUROD2Q15784 382 aa30.01■■■□□ 2.39
VPS16-201ENST00000380443 POLKQ9UBT6 870 aa30■■■□□ 2.39
VPS16-201ENST00000380443 TCERG1O14776 1098 aaKnown RBP29.99■■■□□ 2.39
VPS16-201ENST00000380443 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.99■■■□□ 2.39
VPS16-201ENST00000380443 IL16Q14005 1332 aa29.99■■■□□ 2.39
VPS16-201ENST00000380443 PLEKHG3A1L390 1219 aa29.99■■■□□ 2.39
VPS16-201ENST00000380443 C20orf194Q5TEA3 1177 aa29.99■■■□□ 2.39
VPS16-201ENST00000380443 TMPOP42166 694 aaKnown RBP29.98■■■□□ 2.39
VPS16-201ENST00000380443 COG3Q96JB2 828 aa29.98■■■□□ 2.39
VPS16-201ENST00000380443 ZNF335Q9H4Z2 1342 aaPredicted RBP29.98■■■□□ 2.39
VPS16-201ENST00000380443 PTPRUQ92729 1446 aa29.97■■■□□ 2.39
VPS16-201ENST00000380443 TOPAZ1Q8N9V7 1692 aa29.97■■■□□ 2.39
VPS16-201ENST00000380443 CDK12Q9NYV4 1490 aaPredicted RBP29.97■■■□□ 2.39
VPS16-201ENST00000380443 SLC26A8Q96RN1 970 aa29.96■■■□□ 2.39
VPS16-201ENST00000380443 PRR36Q9H6K5 1346 aa29.96■■■□□ 2.39
VPS16-201ENST00000380443 PIK3R4Q99570 1358 aa29.95■■■□□ 2.38
VPS16-201ENST00000380443 MYT1Q01538 1121 aa29.94■■■□□ 2.38
VPS16-201ENST00000380443 MAP2P11137 1827 aaKnown RBP29.94■■■□□ 2.38
VPS16-201ENST00000380443 NEFMP07197 916 aa29.94■■■□□ 2.38
VPS16-201ENST00000380443 MS4A1P11836 297 aa29.94■■■□□ 2.38
VPS16-201ENST00000380443 AAMPQ13685 434 aa29.94■■■□□ 2.38
VPS16-201ENST00000380443 AMOTL2Q9Y2J4 779 aa29.94■■■□□ 2.38
VPS16-201ENST00000380443 BCAR3O75815 825 aa29.92■■■□□ 2.38
VPS16-201ENST00000380443 NME9Q86XW9 330 aa29.92■■■□□ 2.38
VPS16-201ENST00000380443 CENPQQ7L2Z9 268 aaPredicted RBP29.92■■■□□ 2.38
VPS16-201ENST00000380443 LTBP4Q8N2S1 1624 aa29.91■■■□□ 2.38
VPS16-201ENST00000380443 RARSP54136 660 aaKnown RBP29.9■■■□□ 2.38
VPS16-201ENST00000380443 TRIM35Q9UPQ4 493 aa29.88■■■□□ 2.37
VPS16-201ENST00000380443 KDM2BQ8NHM5 1336 aa29.88■■■□□ 2.37
VPS16-201ENST00000380443 NRKQ7Z2Y5 1582 aa29.87■■■□□ 2.37
VPS16-201ENST00000380443 RSPH6AQ9H0K4 717 aa29.87■■■□□ 2.37
VPS16-201ENST00000380443 XRN1Q8IZH2 1706 aaKnown RBP29.86■■■□□ 2.37
VPS16-201ENST00000380443 TTC21BQ7Z4L5 1316 aa29.86■■■□□ 2.37
VPS16-201ENST00000380443 CERKQ8TCT0 537 aa29.86■■■□□ 2.37
VPS16-201ENST00000380443 ACEP12821 1306 aa29.85■■■□□ 2.37
VPS16-201ENST00000380443 CANXP27824 592 aaKnown RBP29.85■■■□□ 2.37
VPS16-201ENST00000380443 IL13P35225 146 aa29.85■■■□□ 2.37
VPS16-201ENST00000380443 RIPK4P57078 832 aa29.85■■■□□ 2.37
VPS16-201ENST00000380443 USP6P35125 1406 aa29.84■■■□□ 2.37
VPS16-201ENST00000380443 LRRC7Q96NW7 1537 aa29.84■■■□□ 2.37
VPS16-201ENST00000380443 KCNA6P17658 529 aa29.83■■■□□ 2.37
VPS16-201ENST00000380443 PPM1GO15355 546 aaPredicted RBP29.82■■■□□ 2.36
VPS16-201ENST00000380443 TTC21AQ8NDW8 1320 aa29.82■■■□□ 2.36
VPS16-201ENST00000380443 CALD1Q05682 793 aaKnown RBP29.82■■■□□ 2.36
VPS16-201ENST00000380443 EMILIN1Q9Y6C2 1016 aa29.81■■■□□ 2.36
VPS16-201ENST00000380443 OVOS2A0A0J9YW53 1432 aa29.8■■■□□ 2.36
VPS16-201ENST00000380443 OVOS2Q6IE36 1432 aa29.8■■■□□ 2.36
VPS16-201ENST00000380443 ANKARQ7Z5J8 1434 aa29.8■■■□□ 2.36
VPS16-201ENST00000380443 SSH2Q76I76 1423 aa29.79■■■□□ 2.36
VPS16-201ENST00000380443 PRKAR2BP31323 418 aa29.79■■■□□ 2.36
VPS16-201ENST00000380443 STRCP1A6NGW2 1772 aa29.78■■■□□ 2.36
VPS16-201ENST00000380443 NFE2L2Q16236 605 aa29.78■■■□□ 2.36
VPS16-201ENST00000380443 ZRANB1Q9UGI0 708 aa29.78■■■□□ 2.36
VPS16-201ENST00000380443 NWD1Q149M9 1564 aa29.78■■■□□ 2.36
VPS16-201ENST00000380443 USP31Q70CQ4 1352 aa29.77■■■□□ 2.36
VPS16-201ENST00000380443 CHD2O14647 1828 aaKnown RBP29.77■■■□□ 2.36
VPS16-201ENST00000380443 NALCNQ8IZF0 1738 aa29.75■■■□□ 2.35
VPS16-201ENST00000380443 FBLN1P23142 703 aa29.74■■■□□ 2.35
VPS16-201ENST00000380443 LMOD3Q0VAK6 560 aa29.74■■■□□ 2.35
VPS16-201ENST00000380443 ZNF428Q96B54 188 aa29.73■■■□□ 2.35
VPS16-201ENST00000380443 FRAT1Q92837 279 aaPredicted RBP29.72■■■□□ 2.35
VPS16-201ENST00000380443 CLUAP1Q96AJ1 413 aa29.72■■■□□ 2.35
VPS16-201ENST00000380443 EXOSC9Q06265 439 aaKnown RBP29.71■■■□□ 2.35
VPS16-201ENST00000380443 ZKSCAN2Q63HK3 967 aa29.7■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms