RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 CRYBG1Q9Y4K1 1723 aa35.23■■■■□ 3.23
TNFRSF4-201ENST00000379236 UPF1Q92900 1129 aaKnown RBP eCLIP35.23■■■■□ 3.23
TNFRSF4-201ENST00000379236 GJD4Q96KN9 370 aaPredicted RBP35.22■■■■□ 3.23
TNFRSF4-201ENST00000379236 ACEP12821 1306 aa35.22■■■■□ 3.23
TNFRSF4-201ENST00000379236 POLR3AO14802 1390 aaPredicted RBP35.21■■■■□ 3.23
TNFRSF4-201ENST00000379236 CABP2Q9NPB3 220 aa35.2■■■■□ 3.23
TNFRSF4-201ENST00000379236 PPIP5K1Q6PFW1 1433 aa35.2■■■■□ 3.23
TNFRSF4-201ENST00000379236 COL14A1Q05707 1796 aaKnown RBP35.2■■■■□ 3.23
TNFRSF4-201ENST00000379236 PLEKHG3A1L390 1219 aa35.18■■■■□ 3.22
TNFRSF4-201ENST00000379236 PHRF1Q9P1Y6 1649 aaKnown RBP35.17■■■■□ 3.22
TNFRSF4-201ENST00000379236 EVC2Q86UK5 1308 aa35.17■■■■□ 3.22
TNFRSF4-201ENST00000379236 NBPF8Q3BBV2 869 aa35.17■■■■□ 3.22
TNFRSF4-201ENST00000379236 CCDC9Q9Y3X0 531 aaKnown RBP35.16■■■■□ 3.22
TNFRSF4-201ENST00000379236 RALGAPBQ86X10 1494 aa35.16■■■■□ 3.22
TNFRSF4-201ENST00000379236 ATAD2Q6PL18 1390 aa35.15■■■■□ 3.22
TNFRSF4-201ENST00000379236 GLI3P10071 1580 aa35.15■■■■□ 3.22
TNFRSF4-201ENST00000379236 NRAPQ86VF7 1730 aa35.13■■■■□ 3.21
TNFRSF4-201ENST00000379236 FAM83GA6ND36 823 aa35.13■■■■□ 3.21
TNFRSF4-201ENST00000379236 VPS72Q15906 364 aa35.1■■■■□ 3.21
TNFRSF4-201ENST00000379236 NUTM2GQ5VZR2 741 aa35.09■■■■□ 3.21
TNFRSF4-201ENST00000379236 CARD11Q9BXL7 1154 aa35.09■■■■□ 3.21
TNFRSF4-201ENST00000379236 BTG4Q9NY30 223 aa35.08■■■■□ 3.21
TNFRSF4-201ENST00000379236 ABTB2Q8N961 1025 aa35.07■■■■□ 3.2
TNFRSF4-201ENST00000379236 PRDM11Q9NQV5 511 aa35.07■■■■□ 3.2
TNFRSF4-201ENST00000379236 BRWD3Q6RI45 1802 aa35.06■■■■□ 3.2
TNFRSF4-201ENST00000379236 CABP1Q9NZU7 370 aa35.05■■■■□ 3.2
TNFRSF4-201ENST00000379236 BRD4O60885 1362 aaPredicted RBP35.02■■■■□ 3.2
TNFRSF4-201ENST00000379236 KIAA0232Q92628 1395 aa35■■■■□ 3.19
TNFRSF4-201ENST00000379236 NRKQ7Z2Y5 1582 aa35■■■■□ 3.19
TNFRSF4-201ENST00000379236 AKAP12Q02952 1782 aa35■■■■□ 3.19
TNFRSF4-201ENST00000379236 A0A0G2JS52 829 aa34.99■■■■□ 3.19
TNFRSF4-201ENST00000379236 MYT1Q01538 1121 aa34.99■■■■□ 3.19
TNFRSF4-201ENST00000379236 USP6P35125 1406 aa34.98■■■■□ 3.19
TNFRSF4-201ENST00000379236 NLRP13Q86W25 1043 aa34.98■■■■□ 3.19
TNFRSF4-201ENST00000379236 ZC3H6P61129 1189 aaKnown RBP34.97■■■■□ 3.19
TNFRSF4-201ENST00000379236 SEPT12Q8IYM1 358 aa34.96■■■■□ 3.19
TNFRSF4-201ENST00000379236 SBNO2Q9Y2G9 1366 aa34.95■■■■□ 3.19
TNFRSF4-201ENST00000379236 CHRNA2Q15822 529 aa34.94■■■■□ 3.18
TNFRSF4-201ENST00000379236 EP400Q96L91 3159 aa34.93■■■■□ 3.18
TNFRSF4-201ENST00000379236 USP19O94966 1318 aa34.91■■■■□ 3.18
TNFRSF4-201ENST00000379236 ZNF692Q9BU19 519 aaPredicted RBP34.9■■■■□ 3.18
TNFRSF4-201ENST00000379236 PIK3C2AO00443 1686 aa34.89■■■■□ 3.18
TNFRSF4-201ENST00000379236 FAM98CQ17RN3 349 aaKnown RBP34.89■■■■□ 3.18
TNFRSF4-201ENST00000379236 STRN4Q9NRL3 753 aa34.89■■■■□ 3.18
TNFRSF4-201ENST00000379236 NLRP6P59044 892 aa34.88■■■■□ 3.17
TNFRSF4-201ENST00000379236 ONECUT3O60422 494 aaPredicted RBP34.87■■■■□ 3.17
TNFRSF4-201ENST00000379236 SPATA31A5Q5VU36 1347 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 SPATA31A7Q8IWB4 1347 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 EVA1CP58658 441 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 CCDC125Q86Z20 511 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 MON2Q7Z3U7 1717 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 CPDO75976 1380 aa34.86■■■■□ 3.17
TNFRSF4-201ENST00000379236 GCP02774 474 aa34.85■■■■□ 3.17
TNFRSF4-201ENST00000379236 KRT27Q7Z3Y8 459 aa34.85■■■■□ 3.17
TNFRSF4-201ENST00000379236 PCGF6Q9BYE7 350 aa34.84■■■■□ 3.17
TNFRSF4-201ENST00000379236 ZBTB7CA1YPR0 619 aa34.83■■■■□ 3.17
TNFRSF4-201ENST00000379236 KTN1Q86UP2 1357 aaKnown RBP34.83■■■■□ 3.17
TNFRSF4-201ENST00000379236 LMO7Q8WWI1 1683 aa34.82■■■■□ 3.17
TNFRSF4-201ENST00000379236 SSH2Q76I76 1423 aa34.81■■■■□ 3.16
TNFRSF4-201ENST00000379236 SLIT3O75094 1523 aa34.81■■■■□ 3.16
TNFRSF4-201ENST00000379236 TMC1Q8TDI8 760 aa34.81■■■■□ 3.16
TNFRSF4-201ENST00000379236 TTC21BQ7Z4L5 1316 aa34.8■■■■□ 3.16
TNFRSF4-201ENST00000379236 TTC21AQ8NDW8 1320 aa34.8■■■■□ 3.16
TNFRSF4-201ENST00000379236 THSD7AQ9UPZ6 1657 aa34.79■■■■□ 3.16
TNFRSF4-201ENST00000379236 SF3B2Q13435 895 aaKnown RBP34.78■■■■□ 3.16
TNFRSF4-201ENST00000379236 CAMTA1Q9Y6Y1 1673 aa34.78■■■■□ 3.16
TNFRSF4-201ENST00000379236 CPSF1Q10570 1443 aaKnown RBP34.78■■■■□ 3.16
TNFRSF4-201ENST00000379236 SPATA31A1Q5TZJ5 1347 aa34.78■■■■□ 3.16
TNFRSF4-201ENST00000379236 BLMP54132 1417 aaPredicted RBP34.77■■■■□ 3.16
TNFRSF4-201ENST00000379236 USP35Q9P2H5 1018 aa34.75■■■■□ 3.15
TNFRSF4-201ENST00000379236 SLC24A1O60721 1099 aa34.74■■■■□ 3.15
TNFRSF4-201ENST00000379236 HDGFL2Q7Z4V5 671 aaPredicted RBP34.74■■■■□ 3.15
TNFRSF4-201ENST00000379236 ST20-MTHFSA0A0A6YYL1 179 aa34.73■■■■□ 3.15
TNFRSF4-201ENST00000379236 CLSPNQ9HAW4 1339 aa34.72■■■■□ 3.15
TNFRSF4-201ENST00000379236 KCNH5Q8NCM2 988 aa34.71■■■■□ 3.15
TNFRSF4-201ENST00000379236 SOX12O15370 315 aa34.69■■■■□ 3.14
TNFRSF4-201ENST00000379236 LARP1Q6PKG0 1096 aaKnown RBP34.69■■■■□ 3.14
TNFRSF4-201ENST00000379236 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.69■■■■□ 3.14
TNFRSF4-201ENST00000379236 TERF2IPQ9NYB0 399 aa34.69■■■■□ 3.14
TNFRSF4-201ENST00000379236 COL5A2P05997 1499 aaPredicted RBP34.69■■■■□ 3.14
TNFRSF4-201ENST00000379236 PUS7Q96PZ0 661 aaKnown RBP34.68■■■■□ 3.14
TNFRSF4-201ENST00000379236 RGPD1P0DJD0 1748 aa34.67■■■■□ 3.14
TNFRSF4-201ENST00000379236 AATKQ6ZMQ8 1374 aa34.67■■■■□ 3.14
TNFRSF4-201ENST00000379236 SLC12A5Q9H2X9 1139 aa34.67■■■■□ 3.14
TNFRSF4-201ENST00000379236 TIMELESSQ9UNS1 1208 aa34.67■■■■□ 3.14
TNFRSF4-201ENST00000379236 RGPD5Q99666 1765 aa34.67■■■■□ 3.14
TNFRSF4-201ENST00000379236 CD163L1Q9NR16 1453 aa34.66■■■■□ 3.14
TNFRSF4-201ENST00000379236 USP47Q96K76 1375 aa34.65■■■■□ 3.14
TNFRSF4-201ENST00000379236 COL18A1P39060 1754 aa34.65■■■■□ 3.14
TNFRSF4-201ENST00000379236 USP54Q70EL1 1684 aa34.65■■■■□ 3.14
TNFRSF4-201ENST00000379236 TCP11L2Q8N4U5 519 aa34.64■■■■□ 3.14
TNFRSF4-201ENST00000379236 TESK2Q96S53 571 aa34.64■■■■□ 3.14
TNFRSF4-201ENST00000379236 BARGINQ6ZT62 677 aa34.63■■■■□ 3.13
TNFRSF4-201ENST00000379236 EDC4Q6P2E9 1401 aaKnown RBP34.63■■■■□ 3.13
TNFRSF4-201ENST00000379236 NINLQ9Y2I6 1382 aa34.62■■■■□ 3.13
TNFRSF4-201ENST00000379236 THRAP3Q9Y2W1 955 aaKnown RBP34.62■■■■□ 3.13
TNFRSF4-201ENST00000379236 CRB1P82279 1406 aa34.62■■■■□ 3.13
TNFRSF4-201ENST00000379236 A0A1W2PP64 1363 aa34.61■■■■□ 3.13
TNFRSF4-201ENST00000379236 FAM182BQ5T319 152 aa34.6■■■■□ 3.13
TNFRSF4-201ENST00000379236 ZRANB1Q9UGI0 708 aa34.6■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms