RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MVPQ14764 893 aaKnown RBP32.34■■■□□ 2.77
C9orf40-201ENST00000376854 ZKSCAN2Q63HK3 967 aa32.34■■■□□ 2.77
C9orf40-201ENST00000376854 TSR2Q969E8 191 aaKnown RBP32.34■■■□□ 2.77
C9orf40-201ENST00000376854 TERF2IPQ9NYB0 399 aa32.34■■■□□ 2.77
C9orf40-201ENST00000376854 PDZRN3Q9UPQ7 1066 aa32.34■■■□□ 2.77
C9orf40-201ENST00000376854 ALKQ9UM73 1620 aa32.33■■■□□ 2.77
C9orf40-201ENST00000376854 TMPOP42166 694 aaKnown RBP32.32■■■□□ 2.76
C9orf40-201ENST00000376854 GSE1Q14687 1217 aa32.32■■■□□ 2.76
C9orf40-201ENST00000376854 COL3A1P02461 1466 aaPredicted RBP32.31■■■□□ 2.76
C9orf40-201ENST00000376854 FYB1O15117 783 aa32.31■■■□□ 2.76
C9orf40-201ENST00000376854 FTSJ3Q8IY81 847 aaKnown RBP32.31■■■□□ 2.76
C9orf40-201ENST00000376854 DZIP1LQ8IYY4 767 aaKnown RBP32.31■■■□□ 2.76
C9orf40-201ENST00000376854 ZMYM3Q14202 1370 aa32.31■■■□□ 2.76
C9orf40-201ENST00000376854 MLECQ14165 292 aa32.31■■■□□ 2.76
C9orf40-201ENST00000376854 TRIM35Q9UPQ4 493 aa32.29■■■□□ 2.76
C9orf40-201ENST00000376854 CLTCQ00610 1675 aaKnown RBP32.29■■■□□ 2.76
C9orf40-201ENST00000376854 CD163L1Q9NR16 1453 aa32.29■■■□□ 2.76
C9orf40-201ENST00000376854 EXOSC9Q06265 439 aaKnown RBP32.29■■■□□ 2.76
C9orf40-201ENST00000376854 SMC4Q9NTJ3 1288 aa32.28■■■□□ 2.76
C9orf40-201ENST00000376854 MED14O60244 1454 aa32.27■■■□□ 2.76
C9orf40-201ENST00000376854 NLRP1Q9C000 1473 aa32.26■■■□□ 2.76
C9orf40-201ENST00000376854 CDK19Q9BWU1 502 aa32.25■■■□□ 2.75
C9orf40-201ENST00000376854 AGLP35573 1532 aa32.25■■■□□ 2.75
C9orf40-201ENST00000376854 REREQ9P2R6 1566 aa32.25■■■□□ 2.75
C9orf40-201ENST00000376854 FRAT2O75474 233 aaPredicted RBP32.24■■■□□ 2.75
C9orf40-201ENST00000376854 BECN1Q14457 450 aa32.23■■■□□ 2.75
C9orf40-201ENST00000376854 A2ML1A8K2U0 1454 aa32.23■■■□□ 2.75
C9orf40-201ENST00000376854 HDGFL2Q7Z4V5 671 aaPredicted RBP32.23■■■□□ 2.75
C9orf40-201ENST00000376854 UPF2Q9HAU5 1272 aaKnown RBP32.23■■■□□ 2.75
C9orf40-201ENST00000376854 IL16Q14005 1332 aa32.22■■■□□ 2.75
C9orf40-201ENST00000376854 SSH1Q8WYL5 1049 aa32.22■■■□□ 2.75
C9orf40-201ENST00000376854 TRIM27P14373 513 aa32.21■■■□□ 2.75
C9orf40-201ENST00000376854 ARHGEF40Q8TER5 1519 aa32.21■■■□□ 2.75
C9orf40-201ENST00000376854 ANKRD26Q9UPS8 1709 aa32.21■■■□□ 2.75
C9orf40-201ENST00000376854 DIAPH1O60610 1272 aaKnown RBP32.21■■■□□ 2.75
C9orf40-201ENST00000376854 RIPK4P57078 832 aa32.2■■■□□ 2.75
C9orf40-201ENST00000376854 WAPLQ7Z5K2 1190 aa32.2■■■□□ 2.75
C9orf40-201ENST00000376854 CABP1Q9NZU7 370 aa32.2■■■□□ 2.75
C9orf40-201ENST00000376854 SPATA31D1Q6ZQQ2 1576 aa32.18■■■□□ 2.74
C9orf40-201ENST00000376854 PPP6R1Q9UPN7 881 aa32.18■■■□□ 2.74
C9orf40-201ENST00000376854 ATF7IPQ6VMQ6 1270 aa32.17■■■□□ 2.74
C9orf40-201ENST00000376854 RIMS2Q9UQ26 1411 aa32.17■■■□□ 2.74
C9orf40-201ENST00000376854 IL27Q8NEV9 243 aa32.17■■■□□ 2.74
C9orf40-201ENST00000376854 PNNQ9H307 717 aaKnown RBP32.17■■■□□ 2.74
C9orf40-201ENST00000376854 PNPLA6Q8IY17 1366 aa32.17■■■□□ 2.74
C9orf40-201ENST00000376854 TBC1D32Q96NH3 1257 aa32.16■■■□□ 2.74
C9orf40-201ENST00000376854 DDX19BQ9UMR2 479 aa32.16■■■□□ 2.74
C9orf40-201ENST00000376854 ITPRIPQ8IWB1 547 aa32.16■■■□□ 2.74
C9orf40-201ENST00000376854 NOB1Q9ULX3 412 aaKnown RBP32.15■■■□□ 2.74
C9orf40-201ENST00000376854 HDAC1Q13547 482 aaPredicted RBP32.13■■■□□ 2.73
C9orf40-201ENST00000376854 SETD1AO15047 1707 aaKnown RBP32.1■■■□□ 2.73
C9orf40-201ENST00000376854 FCHSD2O94868 740 aa32.09■■■□□ 2.73
C9orf40-201ENST00000376854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.08■■■□□ 2.73
C9orf40-201ENST00000376854 FBLN1P23142 703 aa32.08■■■□□ 2.73
C9orf40-201ENST00000376854 TMEM57Q8N5G2 664 aa32.08■■■□□ 2.73
C9orf40-201ENST00000376854 KIF16BQ96L93 1317 aa32.07■■■□□ 2.72
C9orf40-201ENST00000376854 SLKQ9H2G2 1235 aaPredicted RBP32.07■■■□□ 2.72
C9orf40-201ENST00000376854 DLC1Q96QB1 1528 aa32.07■■■□□ 2.72
C9orf40-201ENST00000376854 IPO8O15397 1037 aaKnown RBP32.06■■■□□ 2.72
C9orf40-201ENST00000376854 KIF20BQ96Q89 1820 aa32.06■■■□□ 2.72
C9orf40-201ENST00000376854 PRKAR2BP31323 418 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 RSPH6AQ9H0K4 717 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 ZBTB40Q9NUA8 1239 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 POLKQ9UBT6 870 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 LRRC7Q96NW7 1537 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 CDC42BPGQ6DT37 1551 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 ALDH1L2Q3SY69 923 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 TBC1D2Q9BYX2 928 aa32.03■■■□□ 2.72
C9orf40-201ENST00000376854 NRXN3Q9Y4C0 1643 aa32.02■■■□□ 2.72
C9orf40-201ENST00000376854 METP08581 1390 aa32.02■■■□□ 2.72
C9orf40-201ENST00000376854 SMC5Q8IY18 1101 aa32.02■■■□□ 2.72
C9orf40-201ENST00000376854 ANTXR1Q9H6X2 564 aa32.01■■■□□ 2.71
C9orf40-201ENST00000376854 FAM135BQ49AJ0 1406 aa32.01■■■□□ 2.71
C9orf40-201ENST00000376854 BRPF3Q9ULD4 1205 aa31.99■■■□□ 2.71
C9orf40-201ENST00000376854 ATP7BP35670 1465 aa31.99■■■□□ 2.71
C9orf40-201ENST00000376854 TXNDC2Q86VQ3 553 aa31.98■■■□□ 2.71
C9orf40-201ENST00000376854 KIF13AQ9H1H9 1805 aa31.97■■■□□ 2.71
C9orf40-201ENST00000376854 ESF1Q9H501 851 aaKnown RBP31.96■■■□□ 2.71
C9orf40-201ENST00000376854 RTN4Q9NQC3 1192 aaKnown RBP31.96■■■□□ 2.71
C9orf40-201ENST00000376854 MFAP1P55081 439 aaKnown RBP31.95■■■□□ 2.71
C9orf40-201ENST00000376854 C22orf23Q9BZE7 217 aa31.95■■■□□ 2.71
C9orf40-201ENST00000376854 ZNF428Q96B54 188 aa31.94■■■□□ 2.7
C9orf40-201ENST00000376854 WASLO00401 505 aaPredicted RBP31.94■■■□□ 2.7
C9orf40-201ENST00000376854 NFE2L2Q16236 605 aa31.94■■■□□ 2.7
C9orf40-201ENST00000376854 NCKAP5LQ9HCH0 1330 aa31.94■■■□□ 2.7
C9orf40-201ENST00000376854 HMOX1P09601 288 aa31.93■■■□□ 2.7
C9orf40-201ENST00000376854 PHACTR3Q96KR7 559 aa31.93■■■□□ 2.7
C9orf40-201ENST00000376854 PPIP5K1Q6PFW1 1433 aa31.92■■■□□ 2.7
C9orf40-201ENST00000376854 BRPF1P55201 1214 aaPredicted RBP31.92■■■□□ 2.7
C9orf40-201ENST00000376854 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.92■■■□□ 2.7
C9orf40-201ENST00000376854 ZRANB1Q9UGI0 708 aa31.91■■■□□ 2.7
C9orf40-201ENST00000376854 NUCB1Q02818 461 aa31.9■■■□□ 2.7
C9orf40-201ENST00000376854 NME9Q86XW9 330 aa31.89■■■□□ 2.7
C9orf40-201ENST00000376854 EMILIN1Q9Y6C2 1016 aa31.89■■■□□ 2.7
C9orf40-201ENST00000376854 CALD1Q05682 793 aaKnown RBP31.89■■■□□ 2.7
C9orf40-201ENST00000376854 THUMPD2Q9BTF0 503 aaKnown RBP31.89■■■□□ 2.7
C9orf40-201ENST00000376854 CPSF1Q10570 1443 aaKnown RBP31.88■■■□□ 2.69
C9orf40-201ENST00000376854 EDC4Q6P2E9 1401 aaKnown RBP31.87■■■□□ 2.69
C9orf40-201ENST00000376854 VAMP4O75379 141 aa31.86■■■□□ 2.69
C9orf40-201ENST00000376854 IL13P35225 146 aa31.86■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms