RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 COL3A1P02461 1466 aaPredicted RBP26.29■■□□□ 1.8
VSX1-202ENST00000376709 ARHGAP23Q9P227 1491 aa26.29■■□□□ 1.8
VSX1-202ENST00000376709 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.29■■□□□ 1.8
VSX1-202ENST00000376709 SLC26A8Q96RN1 970 aa26.29■■□□□ 1.8
VSX1-202ENST00000376709 ADGRB2O60241 1585 aa26.28■■□□□ 1.8
VSX1-202ENST00000376709 PPIP5K1Q6PFW1 1433 aa26.28■■□□□ 1.8
VSX1-202ENST00000376709 NCBP3Q53F19 620 aaKnown RBP26.26■■□□□ 1.79
VSX1-202ENST00000376709 NUDT16Q96DE0 195 aaKnown RBP26.25■■□□□ 1.79
VSX1-202ENST00000376709 NCKAP5LQ9HCH0 1330 aa26.24■■□□□ 1.79
VSX1-202ENST00000376709 PTPRUQ92729 1446 aa26.24■■□□□ 1.79
VSX1-202ENST00000376709 CANXP27824 592 aaKnown RBP26.23■■□□□ 1.79
VSX1-202ENST00000376709 THEMISQ8N1K5 641 aaPredicted RBP26.23■■□□□ 1.79
VSX1-202ENST00000376709 MAPK8IP3Q9UPT6 1336 aa26.23■■□□□ 1.79
VSX1-202ENST00000376709 DIAPH1O60610 1272 aaKnown RBP26.23■■□□□ 1.79
VSX1-202ENST00000376709 CPSF1Q10570 1443 aaKnown RBP26.22■■□□□ 1.79
VSX1-202ENST00000376709 MYH16Q9H6N6 1097 aa26.22■■□□□ 1.79
VSX1-202ENST00000376709 RIMS1Q86UR5 1692 aaKnown RBP26.21■■□□□ 1.79
VSX1-202ENST00000376709 EDC4Q6P2E9 1401 aaKnown RBP26.21■■□□□ 1.79
VSX1-202ENST00000376709 PLEKHF1Q96S99 279 aa26.21■■□□□ 1.79
VSX1-202ENST00000376709 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.21■■□□□ 1.79
VSX1-202ENST00000376709 PNPLA6Q8IY17 1366 aa26.21■■□□□ 1.79
VSX1-202ENST00000376709 CENPQQ7L2Z9 268 aaPredicted RBP26.2■■□□□ 1.79
VSX1-202ENST00000376709 KDM2BQ8NHM5 1336 aa26.2■■□□□ 1.79
VSX1-202ENST00000376709 MS4A1P11836 297 aa26.2■■□□□ 1.78
VSX1-202ENST00000376709 CCDC61Q9Y6R9 512 aa26.19■■□□□ 1.78
VSX1-202ENST00000376709 PRR36Q9H6K5 1346 aa26.19■■□□□ 1.78
VSX1-202ENST00000376709 CDC42BPGQ6DT37 1551 aa26.19■■□□□ 1.78
VSX1-202ENST00000376709 PPM1GO15355 546 aaPredicted RBP26.19■■□□□ 1.78
VSX1-202ENST00000376709 PDE3AQ14432 1141 aa26.18■■□□□ 1.78
VSX1-202ENST00000376709 TMPOP42166 694 aaKnown RBP26.17■■□□□ 1.78
VSX1-202ENST00000376709 RARSP54136 660 aaKnown RBP26.17■■□□□ 1.78
VSX1-202ENST00000376709 ERICH6Q7L0X2 663 aa26.17■■□□□ 1.78
VSX1-202ENST00000376709 PNNQ9H307 717 aaKnown RBP26.17■■□□□ 1.78
VSX1-202ENST00000376709 FRAT1Q92837 279 aaPredicted RBP26.16■■□□□ 1.78
VSX1-202ENST00000376709 AMOTL2Q9Y2J4 779 aa26.16■■□□□ 1.78
VSX1-202ENST00000376709 TBX22Q9Y458 520 aa26.16■■□□□ 1.78
VSX1-202ENST00000376709 MAP2P11137 1827 aaKnown RBP26.16■■□□□ 1.78
VSX1-202ENST00000376709 CEP170BQ9Y4F5 1589 aaPredicted RBP26.16■■□□□ 1.78
VSX1-202ENST00000376709 ANP32AP39687 249 aaKnown RBP26.15■■□□□ 1.78
VSX1-202ENST00000376709 POLKQ9UBT6 870 aa26.15■■□□□ 1.78
VSX1-202ENST00000376709 FBLN1P23142 703 aa26.14■■□□□ 1.77
VSX1-202ENST00000376709 ITSN1Q15811 1721 aa26.14■■□□□ 1.77
VSX1-202ENST00000376709 MON2Q7Z3U7 1717 aa26.14■■□□□ 1.77
VSX1-202ENST00000376709 NME9Q86XW9 330 aa26.13■■□□□ 1.77
VSX1-202ENST00000376709 PDE4AP27815 886 aa26.13■■□□□ 1.77
VSX1-202ENST00000376709 SKAP1Q86WV1 359 aa26.13■■□□□ 1.77
VSX1-202ENST00000376709 DIP2AQ14689 1571 aa26.12■■□□□ 1.77
VSX1-202ENST00000376709 NUTM2FA1L443 756 aa26.12■■□□□ 1.77
VSX1-202ENST00000376709 ZRANB1Q9UGI0 708 aa26.12■■□□□ 1.77
VSX1-202ENST00000376709 AKAP12Q02952 1782 aa26.11■■□□□ 1.77
VSX1-202ENST00000376709 PANK1Q8TE04 598 aa26.11■■□□□ 1.77
VSX1-202ENST00000376709 TRIM35Q9UPQ4 493 aa26.1■■□□□ 1.77
VSX1-202ENST00000376709 FCHSD2O94868 740 aa26.1■■□□□ 1.77
VSX1-202ENST00000376709 RIPK4P57078 832 aa26.1■■□□□ 1.77
VSX1-202ENST00000376709 PTCH1Q13635 1447 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 COG3Q96JB2 828 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 BCL2L13Q9BXK5 485 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 COG6Q9Y2V7 657 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 LRRC7Q96NW7 1537 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 TSR2Q969E8 191 aaKnown RBP26.09■■□□□ 1.77
VSX1-202ENST00000376709 BACH2Q9BYV9 841 aa26.09■■□□□ 1.77
VSX1-202ENST00000376709 NEFMP07197 916 aa26.08■■□□□ 1.77
VSX1-202ENST00000376709 TOPAZ1Q8N9V7 1692 aa26.08■■□□□ 1.77
VSX1-202ENST00000376709 ZNF692Q9BU19 519 aaPredicted RBP26.07■■□□□ 1.76
VSX1-202ENST00000376709 DNAJC5Q9H3Z4 198 aa26.07■■□□□ 1.76
VSX1-202ENST00000376709 EMILIN1Q9Y6C2 1016 aa26.07■■□□□ 1.76
VSX1-202ENST00000376709 ADAMTSL3P82987 1691 aa26.06■■□□□ 1.76
VSX1-202ENST00000376709 CT47B1P0C2W7 299 aaPredicted RBP26.06■■□□□ 1.76
VSX1-202ENST00000376709 PRKAR2BP31323 418 aa26.05■■□□□ 1.76
VSX1-202ENST00000376709 CLUAP1Q96AJ1 413 aa26.05■■□□□ 1.76
VSX1-202ENST00000376709 AATKQ6ZMQ8 1374 aa26.05■■□□□ 1.76
VSX1-202ENST00000376709 CDK12Q9NYV4 1490 aaPredicted RBP26.05■■□□□ 1.76
VSX1-202ENST00000376709 RSPH6AQ9H0K4 717 aa26.05■■□□□ 1.76
VSX1-202ENST00000376709 IL16Q14005 1332 aa26.04■■□□□ 1.76
VSX1-202ENST00000376709 XRN1Q8IZH2 1706 aaKnown RBP26.04■■□□□ 1.76
VSX1-202ENST00000376709 ACEP12821 1306 aa26.03■■□□□ 1.76
VSX1-202ENST00000376709 EXOSC9Q06265 439 aaKnown RBP26.02■■□□□ 1.76
VSX1-202ENST00000376709 IPO9Q96P70 1041 aaKnown RBP26.02■■□□□ 1.76
VSX1-202ENST00000376709 NOP58Q9Y2X3 529 aaKnown RBP26.02■■□□□ 1.76
VSX1-202ENST00000376709 PLEKHG3A1L390 1219 aa26.01■■□□□ 1.75
VSX1-202ENST00000376709 HMOX1P09601 288 aa26.01■■□□□ 1.75
VSX1-202ENST00000376709 NPM2Q86SE8 214 aaKnown RBP26■■□□□ 1.75
VSX1-202ENST00000376709 ZNF142P52746 1687 aaPredicted RBP26■■□□□ 1.75
VSX1-202ENST00000376709 NRKQ7Z2Y5 1582 aa26■■□□□ 1.75
VSX1-202ENST00000376709 KCNA6P17658 529 aa25.99■■□□□ 1.75
VSX1-202ENST00000376709 RRS1Q15050 365 aaKnown RBP25.99■■□□□ 1.75
VSX1-202ENST00000376709 RLBP1P12271 317 aa25.99■■□□□ 1.75
VSX1-202ENST00000376709 IL13P35225 146 aa25.99■■□□□ 1.75
VSX1-202ENST00000376709 TTC21BQ7Z4L5 1316 aa25.98■■□□□ 1.75
VSX1-202ENST00000376709 AAMPQ13685 434 aa25.98■■□□□ 1.75
VSX1-202ENST00000376709 TNNQ9UQP3 1299 aa25.98■■□□□ 1.75
VSX1-202ENST00000376709 PAK3O75914 559 aaPredicted RBP25.97■■□□□ 1.75
VSX1-202ENST00000376709 IGHDP01880 384 aa25.97■■□□□ 1.75
VSX1-202ENST00000376709 ANKLE2Q86XL3 938 aa25.97■■□□□ 1.75
VSX1-202ENST00000376709 SMC4Q9NTJ3 1288 aa25.97■■□□□ 1.75
VSX1-202ENST00000376709 USP6P35125 1406 aa25.97■■□□□ 1.75
VSX1-202ENST00000376709 ZKSCAN2Q63HK3 967 aa25.96■■□□□ 1.75
VSX1-202ENST00000376709 RGS3P49796 1198 aa25.95■■□□□ 1.74
VSX1-202ENST00000376709 PIK3R4Q99570 1358 aa25.95■■□□□ 1.74
VSX1-202ENST00000376709 NFE2L2Q16236 605 aa25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms