RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 TXNDC2Q86VQ3 553 aa10.66□□□□□ -0.7
UBR4-202ENST00000375224 PHF23Q9BUL5 403 aaPredicted RBP10.66□□□□□ -0.7
UBR4-202ENST00000375224 EDC4Q6P2E9 1401 aaKnown RBP10.65□□□□□ -0.7
UBR4-202ENST00000375224 A0A0U1RQG5 324 aaPredicted RBP10.65□□□□□ -0.7
UBR4-202ENST00000375224 PLIN1O60240 522 aa10.65□□□□□ -0.7
UBR4-202ENST00000375224 CRBNQ96SW2 442 aa10.65□□□□□ -0.7
UBR4-202ENST00000375224 PPIP5K1Q6PFW1 1433 aa10.65□□□□□ -0.71
UBR4-202ENST00000375224 CCDC61Q9Y6R9 512 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 CPSF1Q10570 1443 aaKnown RBP10.64□□□□□ -0.71
UBR4-202ENST00000375224 FER1L4A9Z1Z3 1794 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 C3P01024 1663 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 ZNF692Q9BU19 519 aaPredicted RBP10.64□□□□□ -0.71
UBR4-202ENST00000375224 ZMYND15Q9H091 742 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 COL3A1P02461 1466 aaPredicted RBP10.64□□□□□ -0.71
UBR4-202ENST00000375224 NUDT16Q96DE0 195 aaKnown RBP10.64□□□□□ -0.71
UBR4-202ENST00000375224 ADAMTS13Q76LX8 1427 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 PNPLA6Q8IY17 1366 aa10.64□□□□□ -0.71
UBR4-202ENST00000375224 ADGRB2O60241 1585 aa10.63□□□□□ -0.71
UBR4-202ENST00000375224 DIAPH1O60610 1272 aaKnown RBP10.63□□□□□ -0.71
UBR4-202ENST00000375224 MYH16Q9H6N6 1097 aa10.63□□□□□ -0.71
UBR4-202ENST00000375224 SPINK5Q9NQ38 1064 aaPredicted RBP10.63□□□□□ -0.71
UBR4-202ENST00000375224 SLIT1O75093 1534 aa10.63□□□□□ -0.71
UBR4-202ENST00000375224 THEMISQ8N1K5 641 aaPredicted RBP10.63□□□□□ -0.71
UBR4-202ENST00000375224 CDC42BPGQ6DT37 1551 aa10.63□□□□□ -0.71
UBR4-202ENST00000375224 MAPK8IP3Q9UPT6 1336 aa10.63□□□□□ -0.71
UBR4-202ENST00000375224 U2SURPO15042 1029 aaKnown RBP10.62□□□□□ -0.71
UBR4-202ENST00000375224 NEUROD2Q15784 382 aa10.62□□□□□ -0.71
UBR4-202ENST00000375224 ARHGAP23Q9P227 1491 aa10.62□□□□□ -0.71
UBR4-202ENST00000375224 TCERG1O14776 1098 aaKnown RBP10.62□□□□□ -0.71
UBR4-202ENST00000375224 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.61□□□□□ -0.712e-6■■■□□ 17.5
UBR4-202ENST00000375224 NEFMP07197 916 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
UBR4-202ENST00000375224 LTKP29376 864 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 ITSN1Q15811 1721 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 MON2Q7Z3U7 1717 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 CT47B1P0C2W7 299 aaPredicted RBP10.61□□□□□ -0.71
UBR4-202ENST00000375224 PDE3AQ14432 1141 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 DNAJC5Q9H3Z4 198 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 RRP7AQ9Y3A4 280 aaKnown RBP10.61□□□□□ -0.71
UBR4-202ENST00000375224 TBX22Q9Y458 520 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 DIP2AQ14689 1571 aa10.61□□□□□ -0.71
UBR4-202ENST00000375224 CEBPAP49715 358 aaPredicted RBP10.6□□□□□ -0.71
UBR4-202ENST00000375224 AKAP12Q02952 1782 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 AATKQ6ZMQ8 1374 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 PLEKHF1Q96S99 279 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 ROBO2Q9HCK4 1378 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 FCHSD2O94868 740 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 COG3Q96JB2 828 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 DMRT2Q9Y5R5 561 aa10.6□□□□□ -0.71
UBR4-202ENST00000375224 MS4A1P11836 297 aa10.59□□□□□ -0.71
UBR4-202ENST00000375224 PDIA4P13667 645 aaKnown RBP10.59□□□□□ -0.71
UBR4-202ENST00000375224 IL16Q14005 1332 aa10.59□□□□□ -0.71
UBR4-202ENST00000375224 TMPOP42166 694 aaKnown RBP10.59□□□□□ -0.71
UBR4-202ENST00000375224 AAMPQ13685 434 aa10.59□□□□□ -0.71
UBR4-202ENST00000375224 C20orf194Q5TEA3 1177 aa10.59□□□□□ -0.71
UBR4-202ENST00000375224 CANXP27824 592 aaKnown RBP10.59□□□□□ -0.71
UBR4-202ENST00000375224 CENPQQ7L2Z9 268 aaPredicted RBP10.59□□□□□ -0.71
UBR4-202ENST00000375224 POLKQ9UBT6 870 aa10.59□□□□□ -0.71
UBR4-202ENST00000375224 MAP2P11137 1827 aaKnown RBP10.58□□□□□ -0.72
UBR4-202ENST00000375224 BCAR3O75815 825 aa10.57□□□□□ -0.72
UBR4-202ENST00000375224 PTCH1Q13635 1447 aa10.57□□□□□ -0.72
UBR4-202ENST00000375224 CDK12Q9NYV4 1490 aaPredicted RBP10.57□□□□□ -0.72
UBR4-202ENST00000375224 PLEKHG3A1L390 1219 aa10.57□□□□□ -0.72
UBR4-202ENST00000375224 RSPH6AQ9H0K4 717 aa10.57□□□□□ -0.72
UBR4-202ENST00000375224 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.57□□□□□ -0.72
UBR4-202ENST00000375224 RARSP54136 660 aaKnown RBP10.56□□□□□ -0.72
UBR4-202ENST00000375224 TOPAZ1Q8N9V7 1692 aa10.56□□□□□ -0.72
UBR4-202ENST00000375224 NME9Q86XW9 330 aa10.56□□□□□ -0.72
UBR4-202ENST00000375224 AMOTL2Q9Y2J4 779 aa10.56□□□□□ -0.72
UBR4-202ENST00000375224 NOP58Q9Y2X3 529 aaKnown RBP10.56□□□□□ -0.72
UBR4-202ENST00000375224 PRR36Q9H6K5 1346 aa10.56□□□□□ -0.72
UBR4-202ENST00000375224 SLC26A8Q96RN1 970 aa10.56□□□□□ -0.72
UBR4-202ENST00000375224 PIK3R4Q99570 1358 aa10.55□□□□□ -0.72
UBR4-202ENST00000375224 PPM1GO15355 546 aaPredicted RBP10.55□□□□□ -0.72
UBR4-202ENST00000375224 RIPK4P57078 832 aa10.55□□□□□ -0.72
UBR4-202ENST00000375224 PTPRUQ92729 1446 aa10.55□□□□□ -0.72
UBR4-202ENST00000375224 CALD1Q05682 793 aaKnown RBP10.55□□□□□ -0.72
UBR4-202ENST00000375224 KDM2BQ8NHM5 1336 aa10.55□□□□□ -0.72
UBR4-202ENST00000375224 TRIM35Q9UPQ4 493 aa10.54□□□□□ -0.72
UBR4-202ENST00000375224 TTC21BQ7Z4L5 1316 aa10.54□□□□□ -0.72
UBR4-202ENST00000375224 ACEP12821 1306 aa10.54□□□□□ -0.72
UBR4-202ENST00000375224 PLPPR3Q6T4P5 718 aa10.53□□□□□ -0.72
UBR4-202ENST00000375224 IL13P35225 146 aa10.53□□□□□ -0.72
UBR4-202ENST00000375224 CEP170BQ9Y4F5 1589 aaPredicted RBP10.53□□□□□ -0.72
UBR4-202ENST00000375224 LRRC7Q96NW7 1537 aa10.53□□□□□ -0.72
UBR4-202ENST00000375224 PRKAR2BP31323 418 aa10.53□□□□□ -0.72
UBR4-202ENST00000375224 EMILIN1Q9Y6C2 1016 aa10.53□□□□□ -0.72
UBR4-202ENST00000375224 TTC21AQ8NDW8 1320 aa10.52□□□□□ -0.72
UBR4-202ENST00000375224 NCKAP5LQ9HCH0 1330 aa10.52□□□□□ -0.72
UBR4-202ENST00000375224 NRKQ7Z2Y5 1582 aa10.52□□□□□ -0.72
UBR4-202ENST00000375224 USP6P35125 1406 aa10.52□□□□□ -0.73
UBR4-202ENST00000375224 ANP32AP39687 249 aaKnown RBP10.52□□□□□ -0.73
UBR4-202ENST00000375224 LMOD3Q0VAK6 560 aa10.52□□□□□ -0.73
UBR4-202ENST00000375224 NFE2L2Q16236 605 aa10.52□□□□□ -0.73
UBR4-202ENST00000375224 FRAT1Q92837 279 aaPredicted RBP10.52□□□□□ -0.73
UBR4-202ENST00000375224 FGD1P98174 961 aa10.52□□□□□ -0.73
UBR4-202ENST00000375224 XRN1Q8IZH2 1706 aaKnown RBP10.51□□□□□ -0.73
UBR4-202ENST00000375224 CLUAP1Q96AJ1 413 aa10.51□□□□□ -0.73
UBR4-202ENST00000375224 ZNF428Q96B54 188 aa10.51□□□□□ -0.73
UBR4-202ENST00000375224 RIMS1Q86UR5 1692 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms