RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 HCSTQ9UBK5 93 aa10.23□□□□□ -0.77
RNU4-39P-201ENST00000362455 CTHP32929 405 aa10.22□□□□□ -0.77
RNU4-39P-201ENST00000362455 TLL1O43897 1013 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 PPP1R15AO75807 674 aaPredicted RBP10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 FBXO45P0C2W1 286 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 CCNYL3P0C7X3 344 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 MMP16P51512 607 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 TRIM26Q12899 539 aaPredicted RBP10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 NR1H3Q13133 447 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 SEMA3FQ13275 785 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 CFAP70Q5T0N1 1121 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 PPP1R12CQ9BZL4 782 aa10.21□□□□□ -0.77
RNU4-39P-201ENST00000362455 EIF4G2P78344 907 aaKnown RBP eCLIP10.2□□□□□ -0.78
RNU4-39P-201ENST00000362455 UCN2Q96RP3 112 aa10.2□□□□□ -0.78
RNU4-39P-201ENST00000362455 NUDT12Q9BQG2 462 aa10.2□□□□□ -0.78
RNU4-39P-201ENST00000362455 ZC3H4Q9UPT8 1303 aaKnown RBP10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 ZBBXA8MT70 800 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 ZPR1O75312 459 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 RFX1P22670 979 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 RETREG2Q8NC44 543 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 MTRQ99707 1265 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 EVA1BQ9NVM1 165 aa10.19□□□□□ -0.78
RNU4-39P-201ENST00000362455 PALM3A6NDB9 673 aaPredicted RBP10.18□□□□□ -0.78
RNU4-39P-201ENST00000362455 ADH1BP00325 375 aa10.18□□□□□ -0.78
RNU4-39P-201ENST00000362455 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.17□□□□□ -0.78
RNU4-39P-201ENST00000362455 KCNH2Q12809 1159 aa10.17□□□□□ -0.78
RNU4-39P-201ENST00000362455 PBXIP1Q96AQ6 731 aa10.17□□□□□ -0.78
RNU4-39P-201ENST00000362455 MMRN1Q13201 1228 aa10.16□□□□□ -0.78
RNU4-39P-201ENST00000362455 PODXL2Q9NZ53 605 aa10.16□□□□□ -0.78
RNU4-39P-201ENST00000362455 TFIP11Q9UBB9 837 aaKnown RBP10.16□□□□□ -0.78
RNU4-39P-201ENST00000362455 ACIN1Q9UKV3 1341 aaKnown RBP10.15□□□□□ -0.78
RNU4-39P-201ENST00000362455 TRAIPQ9BWF2 469 aa10.15□□□□□ -0.78
RNU4-39P-201ENST00000362455 IL21Q9HBE4 155 aa10.15□□□□□ -0.78
RNU4-39P-201ENST00000362455 LMOD1P29536 600 aaPredicted RBP10.14□□□□□ -0.79
RNU4-39P-201ENST00000362455 TJAP1Q5JTD0 557 aa10.14□□□□□ -0.79
RNU4-39P-201ENST00000362455 ARMC2Q8NEN0 867 aa10.14□□□□□ -0.79
RNU4-39P-201ENST00000362455 ZNF516Q92618 1163 aa10.14□□□□□ -0.79
RNU4-39P-201ENST00000362455 SRPK2P78362 688 aaKnown RBP10.13□□□□□ -0.79
RNU4-39P-201ENST00000362455 TBC1D9Q6ZT07 1266 aa10.13□□□□□ -0.79
RNU4-39P-201ENST00000362455 PTK2Q05397 1052 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 NBPF14Q5TI25 921 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 PDXDC2PQ6P474 469 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 CCDC24Q8N4L8 307 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 GPKOWQ92917 476 aaPredicted RBP eCLIP10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 SLC6A16Q9GZN6 736 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 GPSM3Q9Y4H4 160 aa10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 MAFBQ9Y5Q3 323 aaPredicted RBP10.12□□□□□ -0.79
RNU4-39P-201ENST00000362455 ATP9BO43861 1147 aa10.1□□□□□ -0.79
RNU4-39P-201ENST00000362455 PTCRAQ6ISU1 281 aaPredicted RBP10.1□□□□□ -0.79
RNU4-39P-201ENST00000362455 OCSTAMPQ9BR26 566 aa10.1□□□□□ -0.79
RNU4-39P-201ENST00000362455 UNC93B1Q9H1C4 597 aa10.1□□□□□ -0.79
RNU4-39P-201ENST00000362455 PIK3CDO00329 1044 aa10.09□□□□□ -0.79
RNU4-39P-201ENST00000362455 NKX2-3Q8TAU0 364 aa10.08□□□□□ -0.8
RNU4-39P-201ENST00000362455 ZBTB7CA1YPR0 619 aa10.07□□□□□ -0.8
RNU4-39P-201ENST00000362455 S1PR4O95977 384 aa10.07□□□□□ -0.8
RNU4-39P-201ENST00000362455 KCNC4Q03721 635 aa10.07□□□□□ -0.8
RNU4-39P-201ENST00000362455 CDCA8Q53HL2 280 aa10.07□□□□□ -0.8
RNU4-39P-201ENST00000362455 ARHGAP9Q9BRR9 750 aa10.07□□□□□ -0.8
RNU4-39P-201ENST00000362455 NFATC2IPQ8NCF5 419 aa10.06□□□□□ -0.8
RNU4-39P-201ENST00000362455 ADAM32Q8TC27 787 aa10.06□□□□□ -0.8
RNU4-39P-201ENST00000362455 PCDHB9Q9Y5E1 797 aa10.06□□□□□ -0.8
RNU4-39P-201ENST00000362455 ITGBL1O95965 494 aaPredicted RBP10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 CSB-PGBD3P0DP91 1061 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 PDE4CQ08493 712 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 SH3BP5LQ7L8J4 393 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 FAM174AQ8TBP5 190 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 ZNF592Q92610 1267 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 CEP126Q9P2H0 1117 aa10.05□□□□□ -0.8
RNU4-39P-201ENST00000362455 SKIP12755 728 aa10.04□□□□□ -0.8
RNU4-39P-201ENST00000362455 MCCD1P59942 119 aaPredicted RBP10.04□□□□□ -0.8
RNU4-39P-201ENST00000362455 KCTD17Q8N5Z5 321 aa10.04□□□□□ -0.8
RNU4-39P-201ENST00000362455 FCF1Q9Y324 198 aaKnown RBP10.04□□□□□ -0.8
RNU4-39P-201ENST00000362455 ATG7O95352 703 aa10.03□□□□□ -0.8
RNU4-39P-201ENST00000362455 ZBTB33Q86T24 672 aa10.03□□□□□ -0.8
RNU4-39P-201ENST00000362455 AEBP1Q8IUX7 1158 aa10.03□□□□□ -0.8
RNU4-39P-201ENST00000362455 USTQ9Y2C2 406 aa10.03□□□□□ -0.8
RNU4-39P-201ENST00000362455 USP17L3A6NCW0 530 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 USP17L4A6NCW7 530 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 USP17L5A8MUK1 530 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 SLFNL1Q499Z3 407 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 KANK4Q5T7N3 995 aaPredicted RBP10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 USP17L2Q6R6M4 530 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 USP17L1Q7RTZ2 530 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 BAP1Q92560 729 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 CARD14Q9BXL6 1004 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 VRTNQ9H8Y1 702 aa10.02□□□□□ -0.81
RNU4-39P-201ENST00000362455 MAGEB6P1A0A0J9YX57 407 aa10.01□□□□□ -0.81
RNU4-39P-201ENST00000362455 LINC01559Q495D7 138 aa10.01□□□□□ -0.81
RNU4-39P-201ENST00000362455 SH3RF1Q7Z6J0 888 aa10.01□□□□□ -0.81
RNU4-39P-201ENST00000362455 PLEKHM2Q8IWE5 1019 aa10.01□□□□□ -0.81
RNU4-39P-201ENST00000362455 RNF135Q8IUD6 432 aa10□□□□□ -0.81
RNU4-39P-201ENST00000362455 DEPDC4Q8N2C3 294 aa10□□□□□ -0.81
RNU4-39P-201ENST00000362455 PHTF2Q8N3S3 785 aa10□□□□□ -0.81
RNU4-39P-201ENST00000362455 CARNS1A5YM72 827 aa9.99□□□□□ -0.81
RNU4-39P-201ENST00000362455 BPHLQ86WA6 291 aaPredicted RBP9.99□□□□□ -0.81
RNU4-39P-201ENST00000362455 DZIP3Q86Y13 1208 aaKnown RBP9.99□□□□□ -0.81
RNU4-39P-201ENST00000362455 ZNF511Q8NB15 262 aa9.99□□□□□ -0.81
RNU4-39P-201ENST00000362455 FOXJ1Q92949 421 aa9.99□□□□□ -0.81
RNU4-39P-201ENST00000362455 AGERQ15109 404 aa9.98□□□□□ -0.81
RNU4-39P-201ENST00000362455 PLPP7Q8NBV4 271 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms