RNA–Protein interactions for RNA: ENST00000362011.6

SHISA4-201, Transcript of shisa family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHISA4, Length 1,341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA4-201ENST00000362011 SLC12A5Q9H2X9 1139 aa28.35■■■□□ 2.13
SHISA4-201ENST00000362011 FNBP4Q8N3X1 1017 aaPredicted RBP28.34■■■□□ 2.13
SHISA4-201ENST00000362011 ANKRD36BQ8N2N9 1353 aa28.33■■■□□ 2.13
SHISA4-201ENST00000362011 ADAMTS2O95450 1211 aa28.33■■■□□ 2.13
SHISA4-201ENST00000362011 CCDC61Q9Y6R9 512 aa28.32■■■□□ 2.12
SHISA4-201ENST00000362011 KIF20BQ96Q89 1820 aa28.32■■■□□ 2.12
SHISA4-201ENST00000362011 NUTM2FA1L443 756 aa28.31■■■□□ 2.12
SHISA4-201ENST00000362011 CD163L1Q9NR16 1453 aa28.31■■■□□ 2.12
SHISA4-201ENST00000362011 CABP1Q9NZU7 370 aa28.29■■■□□ 2.12
SHISA4-201ENST00000362011 USP21Q9UK80 565 aa28.28■■■□□ 2.12
SHISA4-201ENST00000362011 KIF1AQ12756 1690 aa28.28■■■□□ 2.12
SHISA4-201ENST00000362011 PXDNQ92626 1479 aa28.27■■■□□ 2.12
SHISA4-201ENST00000362011 ANKRD26Q9UPS8 1709 aa28.27■■■□□ 2.12
SHISA4-201ENST00000362011 TERF2IPQ9NYB0 399 aa28.27■■■□□ 2.12
SHISA4-201ENST00000362011 A0A1W2PP64 1363 aa28.27■■■□□ 2.12
SHISA4-201ENST00000362011 ATRNO75882 1429 aa28.27■■■□□ 2.12
SHISA4-201ENST00000362011 HDGFL2Q7Z4V5 671 aaPredicted RBP28.26■■■□□ 2.11
SHISA4-201ENST00000362011 TRPC5Q9UL62 973 aaPredicted RBP28.26■■■□□ 2.11
SHISA4-201ENST00000362011 PER1O15534 1290 aaPredicted RBP28.25■■■□□ 2.11
SHISA4-201ENST00000362011 NPHP3Q7Z494 1330 aa28.25■■■□□ 2.11
SHISA4-201ENST00000362011 NRKQ7Z2Y5 1582 aa28.25■■■□□ 2.11
SHISA4-201ENST00000362011 NSD3Q9BZ95 1437 aa28.24■■■□□ 2.11
SHISA4-201ENST00000362011 ANP32CO43423 234 aa28.23■■■□□ 2.11
SHISA4-201ENST00000362011 KNSTRNQ9Y448 316 aa28.23■■■□□ 2.11
SHISA4-201ENST00000362011 CPSF1Q10570 1443 aaKnown RBP28.23■■■□□ 2.11
SHISA4-201ENST00000362011 PLEKHG3A1L390 1219 aa28.22■■■□□ 2.11
SHISA4-201ENST00000362011 ESCO1Q5FWF5 840 aa28.21■■■□□ 2.11
SHISA4-201ENST00000362011 BCL9LQ86UU0 1499 aa28.21■■■□□ 2.11
SHISA4-201ENST00000362011 CARD14Q9BXL6 1004 aa28.2■■■□□ 2.11
SHISA4-201ENST00000362011 KTN1Q86UP2 1357 aaKnown RBP28.19■■■□□ 2.1
SHISA4-201ENST00000362011 POLR3AO14802 1390 aaPredicted RBP28.17■■■□□ 2.1
SHISA4-201ENST00000362011 ACEP12821 1306 aa28.17■■■□□ 2.1
SHISA4-201ENST00000362011 ZNF692Q9BU19 519 aaPredicted RBP28.17■■■□□ 2.1
SHISA4-201ENST00000362011 MARF1Q9Y4F3 1742 aaKnown RBP28.17■■■□□ 2.1
SHISA4-201ENST00000362011 EDC4Q6P2E9 1401 aaKnown RBP28.16■■■□□ 2.1
SHISA4-201ENST00000362011 NPC1L1Q9UHC9 1359 aa28.16■■■□□ 2.1
SHISA4-201ENST00000362011 FOXO3O43524 673 aa28.16■■■□□ 2.1
SHISA4-201ENST00000362011 MIER1Q8N108 512 aa28.16■■■□□ 2.1
SHISA4-201ENST00000362011 PMFBP1Q8TBY8 1022 aa28.16■■■□□ 2.1
SHISA4-201ENST00000362011 PHF8Q9UPP1 1060 aa28.15■■■□□ 2.1
SHISA4-201ENST00000362011 USP6P35125 1406 aa28.13■■■□□ 2.09
SHISA4-201ENST00000362011 AMER1Q5JTC6 1135 aaPredicted RBP28.13■■■□□ 2.09
SHISA4-201ENST00000362011 NGDNQ8NEJ9 315 aaKnown RBP28.13■■■□□ 2.09
SHISA4-201ENST00000362011 CGNL1Q0VF96 1302 aa28.12■■■□□ 2.09
SHISA4-201ENST00000362011 PRKRIP1Q9H875 184 aaPredicted RBP28.12■■■□□ 2.09
SHISA4-201ENST00000362011 CNGB1Q14028 1251 aaPredicted RBP28.11■■■□□ 2.09
SHISA4-201ENST00000362011 NSD2O96028 1365 aa28.11■■■□□ 2.09
SHISA4-201ENST00000362011 XPCQ01831 940 aaPredicted RBP28.1■■■□□ 2.09
SHISA4-201ENST00000362011 CC2D1BQ5T0F9 858 aaKnown RBP28.1■■■□□ 2.09
SHISA4-201ENST00000362011 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.09■■■□□ 2.09
SHISA4-201ENST00000362011 GJD4Q96KN9 370 aaPredicted RBP28.09■■■□□ 2.09
SHISA4-201ENST00000362011 TRPM3Q9HCF6 1732 aaPredicted RBP28.08■■■□□ 2.09
SHISA4-201ENST00000362011 SLIT2O94813 1529 aa28.08■■■□□ 2.09
SHISA4-201ENST00000362011 SPATA31A3Q5VYP0 1347 aa28.07■■■□□ 2.08
SHISA4-201ENST00000362011 EP400Q96L91 3159 aa28.07■■■□□ 2.08
SHISA4-201ENST00000362011 PARD3Q8TEW0 1356 aa28.07■■■□□ 2.08
SHISA4-201ENST00000362011 RALBP1Q15311 655 aa28.07■■■□□ 2.08
SHISA4-201ENST00000362011 CCDC125Q86Z20 511 aa28.07■■■□□ 2.08
SHISA4-201ENST00000362011 SRCAPQ6ZRS2 3230 aa28.06■■■□□ 2.08
SHISA4-201ENST00000362011 USP54Q70EL1 1684 aa28.05■■■□□ 2.08
SHISA4-201ENST00000362011 SSH2Q76I76 1423 aa28.05■■■□□ 2.08
SHISA4-201ENST00000362011 PIK3C2AO00443 1686 aa28.05■■■□□ 2.08
SHISA4-201ENST00000362011 BRD4O60885 1362 aaPredicted RBP28.04■■■□□ 2.08
SHISA4-201ENST00000362011 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.03■■■□□ 2.08
SHISA4-201ENST00000362011 UNC5CLQ8IV45 518 aa28.02■■■□□ 2.08
SHISA4-201ENST00000362011 TTC21BQ7Z4L5 1316 aa28.02■■■□□ 2.08
SHISA4-201ENST00000362011 GLI3P10071 1580 aa28.01■■■□□ 2.07
SHISA4-201ENST00000362011 TTC21AQ8NDW8 1320 aa28.01■■■□□ 2.07
SHISA4-201ENST00000362011 MAP2P11137 1827 aaKnown RBP28■■■□□ 2.07
SHISA4-201ENST00000362011 FYB1O15117 783 aa27.99■■■□□ 2.07
SHISA4-201ENST00000362011 KRT28Q7Z3Y7 464 aa27.99■■■□□ 2.07
SHISA4-201ENST00000362011 ALS2Q96Q42 1657 aa27.99■■■□□ 2.07
SHISA4-201ENST00000362011 PSME1Q06323 249 aa27.98■■■□□ 2.07
SHISA4-201ENST00000362011 MYBBP1AQ9BQG0 1328 aaKnown RBP27.98■■■□□ 2.07
SHISA4-201ENST00000362011 GGNBP2Q9H3C7 697 aa27.97■■■□□ 2.07
SHISA4-201ENST00000362011 ZRANB1Q9UGI0 708 aa27.97■■■□□ 2.07
SHISA4-201ENST00000362011 CCER2I3L3R5 266 aa27.96■■■□□ 2.07
SHISA4-201ENST00000362011 MORC1Q86VD1 984 aa27.96■■■□□ 2.07
SHISA4-201ENST00000362011 TNS3Q68CZ2 1445 aa27.96■■■□□ 2.07
SHISA4-201ENST00000362011 NME9Q86XW9 330 aa27.95■■■□□ 2.07
SHISA4-201ENST00000362011 SBNO1A3KN83 1393 aa27.94■■■□□ 2.06
SHISA4-201ENST00000362011 OVOS2A0A0J9YW53 1432 aa27.92■■■□□ 2.06
SHISA4-201ENST00000362011 OVOS2Q6IE36 1432 aa27.92■■■□□ 2.06
SHISA4-201ENST00000362011 BLMP54132 1417 aaPredicted RBP27.91■■■□□ 2.06
SHISA4-201ENST00000362011 ONECUT3O60422 494 aaPredicted RBP27.91■■■□□ 2.06
SHISA4-201ENST00000362011 PAK3O75914 559 aaPredicted RBP27.91■■■□□ 2.06
SHISA4-201ENST00000362011 COG3Q96JB2 828 aa27.91■■■□□ 2.06
SHISA4-201ENST00000362011 VPS72Q15906 364 aa27.9■■■□□ 2.06
SHISA4-201ENST00000362011 USP31Q70CQ4 1352 aa27.89■■■□□ 2.06
SHISA4-201ENST00000362011 NWD2Q9ULI1 1742 aa27.89■■■□□ 2.05
SHISA4-201ENST00000362011 PPP2R1AP30153 589 aa27.89■■■□□ 2.05
SHISA4-201ENST00000362011 NLRP13Q86W25 1043 aa27.88■■■□□ 2.05
SHISA4-201ENST00000362011 ABCA3Q99758 1704 aa27.87■■■□□ 2.05
SHISA4-201ENST00000362011 BRWD3Q6RI45 1802 aa27.87■■■□□ 2.05
SHISA4-201ENST00000362011 ABTB2Q8N961 1025 aa27.86■■■□□ 2.05
SHISA4-201ENST00000362011 CABLES1Q8TDN4 633 aa27.86■■■□□ 2.05
SHISA4-201ENST00000362011 ARHGEF10O15013 1369 aa27.86■■■□□ 2.05
SHISA4-201ENST00000362011 PLCH1Q4KWH8 1693 aa27.85■■■□□ 2.05
SHISA4-201ENST00000362011 LTN1O94822 1766 aa27.84■■■□□ 2.05
SHISA4-201ENST00000362011 TNNT2P45379 298 aaPredicted RBP27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms