RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NINLQ9Y2I6 1382 aa18.76■□□□□ 0.59
PTPRF-201ENST00000359947 ADAMTS2O95450 1211 aa18.76■□□□□ 0.59
PTPRF-201ENST00000359947 MPHOSPH8Q99549 860 aa18.76■□□□□ 0.59
PTPRF-201ENST00000359947 GNL3LQ9NVN8 582 aaKnown RBP18.76■□□□□ 0.59
PTPRF-201ENST00000359947 SCAPERQ9BY12 1400 aa18.76■□□□□ 0.59
PTPRF-201ENST00000359947 HDGFL1Q5TGJ6 251 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 SLC12A5Q9H2X9 1139 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 RRS1Q15050 365 aaKnown RBP18.75■□□□□ 0.59
PTPRF-201ENST00000359947 CCDC158Q5M9N0 1113 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 SPG7Q9UQ90 795 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 KIF7Q2M1P5 1343 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 SLC4A2P04920 1241 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 TCP11L2Q8N4U5 519 aa18.75■□□□□ 0.59
PTPRF-201ENST00000359947 CCDC73Q6ZRK6 1079 aa18.74■□□□□ 0.59
PTPRF-201ENST00000359947 TSHZ2Q9NRE2 1034 aa18.74■□□□□ 0.59
PTPRF-201ENST00000359947 CDK5RAP3Q96JB5 506 aa18.74■□□□□ 0.59
PTPRF-201ENST00000359947 OFD1O75665 1012 aa18.73■□□□□ 0.59
PTPRF-201ENST00000359947 FGD6Q6ZV73 1430 aa18.73■□□□□ 0.59
PTPRF-201ENST00000359947 TWISTNBQ3B726 338 aaPredicted RBP18.73■□□□□ 0.59
PTPRF-201ENST00000359947 TTLL5Q6EMB2 1281 aa18.73■□□□□ 0.59
PTPRF-201ENST00000359947 TSR2Q969E8 191 aaKnown RBP18.73■□□□□ 0.59
PTPRF-201ENST00000359947 PDILTQ8N807 584 aa18.73■□□□□ 0.59
PTPRF-201ENST00000359947 RRBP1Q9P2E9 1410 aaKnown RBP18.72■□□□□ 0.59
PTPRF-201ENST00000359947 CEBPZQ03701 1054 aaKnown RBP18.72■□□□□ 0.59
PTPRF-201ENST00000359947 EXOSC9Q06265 439 aaKnown RBP18.71■□□□□ 0.59
PTPRF-201ENST00000359947 NBPF1Q3BBV0 1214 aa18.71■□□□□ 0.59
PTPRF-201ENST00000359947 SYNJ2O15056 1496 aa18.71■□□□□ 0.59
PTPRF-201ENST00000359947 KRT18P05783 430 aaKnown RBP18.71■□□□□ 0.59
PTPRF-201ENST00000359947 FKBP4Q02790 459 aaKnown RBP eCLIP18.71■□□□□ 0.591e-7■■■■■ 44.7
PTPRF-201ENST00000359947 SKOR2Q2VWA4 1001 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-201ENST00000359947 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
PTPRF-201ENST00000359947 CUX1P39880 1505 aa18.71■□□□□ 0.59
PTPRF-201ENST00000359947 FYCO1Q9BQS8 1478 aa18.71■□□□□ 0.59
PTPRF-201ENST00000359947 GNAI3P08754 354 aa18.7■□□□□ 0.58
PTPRF-201ENST00000359947 HSP90AB2PQ58FF8 381 aa18.7■□□□□ 0.58
PTPRF-201ENST00000359947 PSMA5P28066 241 aa18.7■□□□□ 0.58
PTPRF-201ENST00000359947 CCDC57Q2TAC2 916 aa18.7■□□□□ 0.58
PTPRF-201ENST00000359947 BTBD11A6QL63 1104 aa18.69■□□□□ 0.58
PTPRF-201ENST00000359947 ZHX3Q9H4I2 956 aa18.69■□□□□ 0.58
PTPRF-201ENST00000359947 OLFM4Q6UX06 510 aa18.69■□□□□ 0.58
PTPRF-201ENST00000359947 SDF4Q9BRK5 362 aa18.69■□□□□ 0.58
PTPRF-201ENST00000359947 NOB1Q9ULX3 412 aaKnown RBP18.69■□□□□ 0.58
PTPRF-201ENST00000359947 PIBF1Q8WXW3 757 aa18.68■□□□□ 0.58
PTPRF-201ENST00000359947 C22orf23Q9BZE7 217 aa18.68■□□□□ 0.58
PTPRF-201ENST00000359947 STK3Q13188 491 aa18.68■□□□□ 0.58
PTPRF-201ENST00000359947 PAXIP1Q6ZW49 1069 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-201ENST00000359947 CHMP4BP1P59074 171 aa18.68■□□□□ 0.58
PTPRF-201ENST00000359947 ZNF219Q9P2Y4 722 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-201ENST00000359947 GNAI2P04899 355 aa18.67■□□□□ 0.58
PTPRF-201ENST00000359947 NUP133Q8WUM0 1156 aa18.67■□□□□ 0.58
PTPRF-201ENST00000359947 BRPF1P55201 1214 aaPredicted RBP18.67■□□□□ 0.58
PTPRF-201ENST00000359947 PTCD1O75127 700 aaKnown RBP18.67■□□□□ 0.58
PTPRF-201ENST00000359947 CDC45O75419 566 aa18.67■□□□□ 0.58
PTPRF-201ENST00000359947 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.67■□□□□ 0.584e-8■■■□□ 16.3
PTPRF-201ENST00000359947 GRIN2BQ13224 1484 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 CCDC7Q96M83 1385 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 RTEL1-TNFRSF6BF6WH68 1400 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 NESP48681 1621 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 CDCA7LQ96GN5 454 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 NCOA2Q15596 1464 aa18.66■□□□□ 0.58
PTPRF-201ENST00000359947 FMNL2Q96PY5 1086 aa18.65■□□□□ 0.58
PTPRF-201ENST00000359947 PPP2R1AP30153 589 aa18.64■□□□□ 0.58
PTPRF-201ENST00000359947 ZNF692Q9BU19 519 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-201ENST00000359947 MPHOSPH10O00566 681 aaKnown RBP18.64■□□□□ 0.57
PTPRF-201ENST00000359947 MIS18AQ9NYP9 233 aa18.64■□□□□ 0.57
PTPRF-201ENST00000359947 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-201ENST00000359947 MYCNP04198 464 aaPredicted RBP18.63■□□□□ 0.57
PTPRF-201ENST00000359947 SKIDA1Q1XH10 827 aa18.63■□□□□ 0.57
PTPRF-201ENST00000359947 RAI14Q9P0K7 980 aa18.63■□□□□ 0.57
PTPRF-201ENST00000359947 STAC3Q96MF2 364 aa18.63■□□□□ 0.57
PTPRF-201ENST00000359947 ERC1Q8IUD2 1116 aa18.62■□□□□ 0.57
PTPRF-201ENST00000359947 GPS2Q13227 327 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 IFT57Q9NWB7 429 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 CCDC69A6NI79 296 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 NEK4P51957 841 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 NACAP1Q9BZK3 213 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 ZPR1O75312 459 aa18.61■□□□□ 0.57
PTPRF-201ENST00000359947 NGLY1Q96IV0 654 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 CHMP5Q9NZZ3 219 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 TXLNAP40222 546 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 USHBP1Q8N6Y0 703 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 LRP2BPQ9P2M1 347 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 ABCF2Q9UG63 623 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 POGZQ7Z3K3 1410 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 MPRIPQ6WCQ1 1025 aa18.6■□□□□ 0.57
PTPRF-201ENST00000359947 NUCB2P80303 420 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 TDO2P48775 406 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 WAPLQ7Z5K2 1190 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 LRRC9Q6ZRR7 1453 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 USP5P45974 858 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 CFTRP13569 1480 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 MATR3P43243 847 aaKnown RBP eCLIP18.59■□□□□ 0.578e-7■■■■■ 28.7
PTPRF-201ENST00000359947 AACSQ86V21 672 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 SRCIN1Q9C0H9 1055 aa18.59■□□□□ 0.57
PTPRF-201ENST00000359947 TTLL12Q14166 644 aaPredicted RBP18.58■□□□□ 0.57
PTPRF-201ENST00000359947 SYCP1Q15431 976 aa18.58■□□□□ 0.57
PTPRF-201ENST00000359947 BCAR3O75815 825 aa18.58■□□□□ 0.57
PTPRF-201ENST00000359947 CAGE1Q8TC20 777 aa18.58■□□□□ 0.57
PTPRF-201ENST00000359947 RUFY1Q96T51 708 aa18.58■□□□□ 0.56
PTPRF-201ENST00000359947 RNF214Q8ND24 703 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms