RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 NME9Q86XW9 330 aa24.53■■□□□ 1.52
SMARCD3-202ENST00000356800 TTC21BQ7Z4L5 1316 aa24.53■■□□□ 1.52
SMARCD3-202ENST00000356800 MSH6P52701 1360 aa24.53■■□□□ 1.52
SMARCD3-202ENST00000356800 ATF3P18847 181 aa24.53■■□□□ 1.52
SMARCD3-202ENST00000356800 ESCO1Q5FWF5 840 aa24.53■■□□□ 1.52
SMARCD3-202ENST00000356800 ORAI2Q96SN7 254 aa24.52■■□□□ 1.52
SMARCD3-202ENST00000356800 CENPBP07199 599 aaPredicted RBP24.51■■□□□ 1.51
SMARCD3-202ENST00000356800 TNNT2P45379 298 aaPredicted RBP24.51■■□□□ 1.51
SMARCD3-202ENST00000356800 ZRANB1Q9UGI0 708 aa24.5■■□□□ 1.51
SMARCD3-202ENST00000356800 KIF1AQ12756 1690 aa24.49■■□□□ 1.51
SMARCD3-202ENST00000356800 CADPS2Q86UW7 1296 aa24.49■■□□□ 1.51
SMARCD3-202ENST00000356800 PNISRQ8TF01 805 aaKnown RBP24.49■■□□□ 1.51
SMARCD3-202ENST00000356800 LTBP4Q8N2S1 1624 aa24.48■■□□□ 1.51
SMARCD3-202ENST00000356800 FAM9BQ8IZU0 186 aa24.47■■□□□ 1.51
SMARCD3-202ENST00000356800 PIK3C2AO00443 1686 aa24.47■■□□□ 1.51
SMARCD3-202ENST00000356800 TTC21AQ8NDW8 1320 aa24.46■■□□□ 1.51
SMARCD3-202ENST00000356800 OVOS2A0A0J9YW53 1432 aa24.44■■□□□ 1.5
SMARCD3-202ENST00000356800 OVOS2Q6IE36 1432 aa24.44■■□□□ 1.5
SMARCD3-202ENST00000356800 MARF1Q9Y4F3 1742 aaKnown RBP24.43■■□□□ 1.5
SMARCD3-202ENST00000356800 MAP2P11137 1827 aaKnown RBP24.43■■□□□ 1.5
SMARCD3-202ENST00000356800 FOXO3O43524 673 aa24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 AEBP2Q6ZN18 517 aaPredicted RBP24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 COG3Q96JB2 828 aa24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 USP54Q70EL1 1684 aa24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 TRPM3Q9HCF6 1732 aaPredicted RBP24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 SCAF1Q9H7N4 1312 aaKnown RBP24.41■■□□□ 1.5
SMARCD3-202ENST00000356800 MTHFSP49914 203 aa24.4■■□□□ 1.5
SMARCD3-202ENST00000356800 PSME1Q06323 249 aa24.4■■□□□ 1.5
SMARCD3-202ENST00000356800 USP31Q70CQ4 1352 aa24.39■■□□□ 1.5
SMARCD3-202ENST00000356800 FBLN1P23142 703 aa24.39■■□□□ 1.49
SMARCD3-202ENST00000356800 SHPRHQ149N8 1683 aa24.38■■□□□ 1.49
SMARCD3-202ENST00000356800 AATKQ6ZMQ8 1374 aa24.36■■□□□ 1.49
SMARCD3-202ENST00000356800 PAK3O75914 559 aaPredicted RBP24.36■■□□□ 1.49
SMARCD3-202ENST00000356800 XPCQ01831 940 aaPredicted RBP24.36■■□□□ 1.49
SMARCD3-202ENST00000356800 SLAIN2Q9P270 581 aa24.35■■□□□ 1.49
SMARCD3-202ENST00000356800 POLKQ9UBT6 870 aa24.34■■□□□ 1.49
SMARCD3-202ENST00000356800 BRINP3Q76B58 766 aa24.34■■□□□ 1.49
SMARCD3-202ENST00000356800 KRT28Q7Z3Y7 464 aa24.34■■□□□ 1.49
SMARCD3-202ENST00000356800 COL3A1P02461 1466 aaPredicted RBP24.33■■□□□ 1.49
SMARCD3-202ENST00000356800 SMG6Q86US8 1419 aaKnown RBP24.33■■□□□ 1.49
SMARCD3-202ENST00000356800 ABTB2Q8N961 1025 aa24.33■■□□□ 1.49
SMARCD3-202ENST00000356800 DDX17Q92841 729 aaKnown RBP24.33■■□□□ 1.49
SMARCD3-202ENST00000356800 NLRP6P59044 892 aa24.32■■□□□ 1.48
SMARCD3-202ENST00000356800 NUTM2GQ5VZR2 741 aa24.31■■□□□ 1.48
SMARCD3-202ENST00000356800 ALS2Q96Q42 1657 aa24.31■■□□□ 1.48
SMARCD3-202ENST00000356800 PNPLA6Q8IY17 1366 aa24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 PXDNQ92626 1479 aa24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 HNRNPUQ00839 825 aaKnown RBP eCLIP24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 CFAP53Q96M91 514 aa24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 ADAMTS8Q9UP79 889 aa24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 EMILIN1Q9Y6C2 1016 aa24.3■■□□□ 1.48
SMARCD3-202ENST00000356800 RRS1Q15050 365 aaKnown RBP24.29■■□□□ 1.48
SMARCD3-202ENST00000356800 NPHP3Q7Z494 1330 aa24.28■■□□□ 1.48
SMARCD3-202ENST00000356800 INSRP06213 1382 aa24.28■■□□□ 1.48
SMARCD3-202ENST00000356800 PEAK1Q9H792 1746 aa24.28■■□□□ 1.48
SMARCD3-202ENST00000356800 WDR43Q15061 677 aaKnown RBP eCLIP24.27■■□□□ 1.48
SMARCD3-202ENST00000356800 BLMP54132 1417 aaPredicted RBP24.27■■□□□ 1.48
SMARCD3-202ENST00000356800 CDK12Q9NYV4 1490 aaPredicted RBP24.27■■□□□ 1.48
SMARCD3-202ENST00000356800 SBNO1A3KN83 1393 aa24.25■■□□□ 1.47
SMARCD3-202ENST00000356800 PPM1GO15355 546 aaPredicted RBP24.24■■□□□ 1.47
SMARCD3-202ENST00000356800 SOX12O15370 315 aa24.24■■□□□ 1.47
SMARCD3-202ENST00000356800 NHSL1Q5SYE7 1610 aa24.24■■□□□ 1.47
SMARCD3-202ENST00000356800 NFAT5O94916 1531 aa24.23■■□□□ 1.47
SMARCD3-202ENST00000356800 SLIT3O75094 1523 aa24.22■■□□□ 1.47
SMARCD3-202ENST00000356800 MAP3K19Q56UN5 1328 aa24.21■■□□□ 1.47
SMARCD3-202ENST00000356800 TNS3Q68CZ2 1445 aa24.21■■□□□ 1.47
SMARCD3-202ENST00000356800 ROBO1Q9Y6N7 1651 aa24.2■■□□□ 1.46
SMARCD3-202ENST00000356800 LTN1O94822 1766 aa24.2■■□□□ 1.46
SMARCD3-202ENST00000356800 LMOD2Q6P5Q4 547 aa24.2■■□□□ 1.46
SMARCD3-202ENST00000356800 USP19O94966 1318 aa24.19■■□□□ 1.46
SMARCD3-202ENST00000356800 SOS2Q07890 1332 aaPredicted RBP24.19■■□□□ 1.46
SMARCD3-202ENST00000356800 SENP3-EIF4A1A0A087X0R7 540 aa24.19■■□□□ 1.46
SMARCD3-202ENST00000356800 DIAPH1O60610 1272 aaKnown RBP24.19■■□□□ 1.46
SMARCD3-202ENST00000356800 MED1Q15648 1581 aaPredicted RBP24.19■■□□□ 1.46
SMARCD3-202ENST00000356800 SPATA31A3Q5VYP0 1347 aa24.18■■□□□ 1.46
SMARCD3-202ENST00000356800 CRYBG1Q9Y4K1 1723 aa24.17■■□□□ 1.46
SMARCD3-202ENST00000356800 ZBED9Q6R2W3 1325 aa24.16■■□□□ 1.46
SMARCD3-202ENST00000356800 IL13P35225 146 aa24.15■■□□□ 1.46
SMARCD3-202ENST00000356800 PHRF1Q9P1Y6 1649 aaKnown RBP24.15■■□□□ 1.46
SMARCD3-202ENST00000356800 CCDC146Q8IYE0 955 aa24.15■■□□□ 1.46
SMARCD3-202ENST00000356800 NUDCQ9Y266 331 aa24.15■■□□□ 1.46
SMARCD3-202ENST00000356800 FLT4P35916 1363 aa24.14■■□□□ 1.45
SMARCD3-202ENST00000356800 U2AF1L5P0DN76 240 aaPredicted RBP24.14■■□□□ 1.45
SMARCD3-202ENST00000356800 U2AF1Q01081 240 aaKnown RBP eCLIP24.14■■□□□ 1.45
SMARCD3-202ENST00000356800 KCNH5Q8NCM2 988 aa24.14■■□□□ 1.45
SMARCD3-202ENST00000356800 U2SURPO15042 1029 aaKnown RBP24.13■■□□□ 1.45
SMARCD3-202ENST00000356800 GCP02774 474 aa24.13■■□□□ 1.45
SMARCD3-202ENST00000356800 HSP90AB2PQ58FF8 381 aa24.13■■□□□ 1.45
SMARCD3-202ENST00000356800 ARHGEF10O15013 1369 aa24.13■■□□□ 1.45
SMARCD3-202ENST00000356800 PLEKHG5O94827 1062 aa24.12■■□□□ 1.45
SMARCD3-202ENST00000356800 KIF24Q5T7B8 1368 aa24.12■■□□□ 1.45
SMARCD3-202ENST00000356800 AHDC1Q5TGY3 1603 aaPredicted RBP24.11■■□□□ 1.45
SMARCD3-202ENST00000356800 AMPHP49418 695 aa24.11■■□□□ 1.45
SMARCD3-202ENST00000356800 EIF4A2Q14240 407 aaKnown RBP24.11■■□□□ 1.45
SMARCD3-202ENST00000356800 RGPD1P0DJD0 1748 aa24.1■■□□□ 1.45
SMARCD3-202ENST00000356800 HOXC9P31274 260 aa24.09■■□□□ 1.45
SMARCD3-202ENST00000356800 RTL1A6NKG5 1358 aa24.08■■□□□ 1.45
SMARCD3-202ENST00000356800 ARHGEF25Q86VW2 580 aa24.08■■□□□ 1.44
SMARCD3-202ENST00000356800 IQSEC2Q5JU85 1478 aa24.08■■□□□ 1.44
SMARCD3-202ENST00000356800 CABLES1Q8TDN4 633 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms