RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SLC4A3P48751 1232 aa7.72□□□□□ -1.17
UPF2-201ENST00000356352 WIZO95785 1651 aa7.72□□□□□ -1.17
UPF2-201ENST00000356352 KRT18P05783 430 aaKnown RBP7.71□□□□□ -1.17
UPF2-201ENST00000356352 AIMP1Q12904 312 aaKnown RBP7.71□□□□□ -1.17
UPF2-201ENST00000356352 TTC39AQ5SRH9 613 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 ZSCAN25Q6NSZ9 544 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 AEBP1Q8IUX7 1158 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 GCC1Q96CN9 775 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 ZNHIT6Q9NWK9 470 aaKnown RBP7.71□□□□□ -1.17
UPF2-201ENST00000356352 STIM1Q13586 685 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 FBXO3Q9UK99 471 aa7.71□□□□□ -1.17
UPF2-201ENST00000356352 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.71□□□□□ -1.18
UPF2-201ENST00000356352 RABEP1Q15276 862 aa7.71□□□□□ -1.18
UPF2-201ENST00000356352 SAMD1Q6SPF0 538 aaPredicted RBP7.71□□□□□ -1.18
UPF2-201ENST00000356352 NACAP1Q9BZK3 213 aa7.71□□□□□ -1.18
UPF2-201ENST00000356352 LNPKQ9C0E8 428 aa7.71□□□□□ -1.18
UPF2-201ENST00000356352 FOSBP53539 338 aa7.71□□□□□ -1.18
UPF2-201ENST00000356352 KLHL34Q8N239 644 aa7.71□□□□□ -1.18
UPF2-201ENST00000356352 CCDC7Q96M83 1385 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 TSPY26PQ9H489 355 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 NASPP49321 788 aaPredicted RBP7.7□□□□□ -1.18
UPF2-201ENST00000356352 FAM13BQ9NYF5 915 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 DESP17661 470 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 GAPVD1Q14C86 1478 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 ATAD2BQ9ULI0 1458 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 SMC2O95347 1197 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 HMOX1P09601 288 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 TRIM22Q8IYM9 498 aa7.7□□□□□ -1.18
UPF2-201ENST00000356352 H0YHG0 523 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CT47B1P0C2W7 299 aaPredicted RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 PDIA4P13667 645 aaKnown RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 NLRP6P59044 892 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 PAF1Q8N7H5 531 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 GNAI2P04899 355 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 TATP17735 454 aaPredicted RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 STK38Q15208 465 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 DNAJC2Q99543 621 aaKnown RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 TRIM5Q9C035 493 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 FGD6Q6ZV73 1430 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CCDC66A2RUB6 948 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 GOLGA6L10A6NI86 522 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CCT4P50991 539 aaKnown RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 NOL7Q9UMY1 257 aaKnown RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 CBFA2T2O43439 604 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 SURF6O75683 361 aaKnown RBP7.69□□□□□ -1.18
UPF2-201ENST00000356352 CCDC57Q2TAC2 916 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CYB5RLQ6IPT4 315 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CNNM1Q9NRU3 951 aa7.69□□□□□ -1.18
UPF2-201ENST00000356352 CDKL5O76039 1030 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 IQCEQ6IPM2 695 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 HMGN5P82970 282 aaKnown RBP7.68□□□□□ -1.18
UPF2-201ENST00000356352 FAM69CQ0P6D2 419 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 DNAI2Q9GZS0 605 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 SMARCA4P51532 1647 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 SOGA3Q5TF21 947 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 ANKRD50Q9ULJ7 1429 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 ARHGAP5Q13017 1502 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 PLEKHH2Q8IVE3 1493 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 GOLGA6L7A0A1B0GV03 622 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 TRIM21P19474 475 aaKnown RBP7.68□□□□□ -1.18
UPF2-201ENST00000356352 SF3B2Q13435 895 aaKnown RBP7.68□□□□□ -1.18
UPF2-201ENST00000356352 CAVIN1Q6NZI2 390 aaKnown RBP7.68□□□□□ -1.18
UPF2-201ENST00000356352 LEKR1Q6ZMV7 388 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 SRCIN1Q9C0H9 1055 aa7.68□□□□□ -1.18
UPF2-201ENST00000356352 CCDC69A6NI79 296 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 SPG7Q9UQ90 795 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 CYP46A1Q9Y6A2 500 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 PRDM2Q13029 1718 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 PPFIBP1Q86W92 1011 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 VSIG10Q8N0Z9 540 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 ZNF692Q9BU19 519 aaPredicted RBP7.67□□□□□ -1.18
UPF2-201ENST00000356352 PDCL3Q9H2J4 239 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 GGNBP2Q9H3C7 697 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 SEPT7Q16181 437 aaKnown RBP7.67□□□□□ -1.18
UPF2-201ENST00000356352 ABTB2Q8N961 1025 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 CABP2Q9NPB3 220 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 HFM1A2PYH4 1435 aa7.67□□□□□ -1.18
UPF2-201ENST00000356352 RBM42Q9BTD8 480 aaKnown RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 PHF23Q9BUL5 403 aaPredicted RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 ERLIN1O75477 346 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 CCDC192P0DO97 292 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 WASF1Q92558 559 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 MTMR7Q9Y216 660 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 EZRP15311 586 aaKnown RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 PDE3AQ14432 1141 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 TWISTNBQ3B726 338 aaPredicted RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 CCDC181Q5TID7 509 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 BMP2KQ9NSY1 1161 aaPredicted RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 PANK1Q8TE04 598 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 DEF6Q9H4E7 631 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 CTNNA3Q9UI47 895 aa7.66□□□□□ -1.18
UPF2-201ENST00000356352 WDR33Q9C0J8 1336 aaKnown RBP7.66□□□□□ -1.18
UPF2-201ENST00000356352 NEFHP12036 1026 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 SERPINC1P01008 464 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 NEK4P51957 841 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 CABP4P57796 275 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 LRRCC1Q9C099 1032 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 ESCO1Q5FWF5 840 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 TTLL5Q6EMB2 1281 aa7.65□□□□□ -1.18
UPF2-201ENST00000356352 ZSCAN31Q96LW9 406 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms