RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 CHAMP1Q96JM3 812 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 MINK1Q8N4C8 1332 aaPredicted RBP12.66□□□□□ -0.38
PTPRA-203ENST00000356147 APBB1O00213 710 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 RBM25P49756 843 aaKnown RBP12.66□□□□□ -0.38
PTPRA-203ENST00000356147 TBC1D9Q6ZT07 1266 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 GBP4Q96PP9 640 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 ATAD2Q6PL18 1390 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 RAB3GAP1Q15042 981 aa12.65□□□□□ -0.38
PTPRA-203ENST00000356147 TSPYL6Q8N831 410 aa12.65□□□□□ -0.38
PTPRA-203ENST00000356147 EVC2Q86UK5 1308 aa12.65□□□□□ -0.39
PTPRA-203ENST00000356147 DDX49Q9Y6V7 483 aaKnown RBP12.64□□□□□ -0.39
PTPRA-203ENST00000356147 MROH2AA6NES4 1674 aa12.64□□□□□ -0.39
PTPRA-203ENST00000356147 TET3O43151 1660 aa12.64□□□□□ -0.39
PTPRA-203ENST00000356147 ZMYM3Q14202 1370 aa12.64□□□□□ -0.39
PTPRA-203ENST00000356147 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.64□□□□□ -0.392e-6■■■□□ 15.5
PTPRA-203ENST00000356147 FOXD4L5Q5VV16 416 aaPredicted RBP12.64□□□□□ -0.39
PTPRA-203ENST00000356147 FOXD4L4Q8WXT5 416 aaPredicted RBP12.64□□□□□ -0.39
PTPRA-203ENST00000356147 ZMYND15Q9H091 742 aa12.64□□□□□ -0.39
PTPRA-203ENST00000356147 MYOM2P54296 1465 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 CHD1O14646 1710 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 ZBTB7CA1YPR0 619 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 IPO8O15397 1037 aaKnown RBP12.63□□□□□ -0.39
PTPRA-203ENST00000356147 PKP1Q13835 747 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 A0A1W2PP64 1363 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 SBNO2Q9Y2G9 1366 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 K7ELQ4 463 aaPredicted RBP12.63□□□□□ -0.39
PTPRA-203ENST00000356147 SNX21Q969T3 373 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 ARID3AQ99856 593 aa12.63□□□□□ -0.39
PTPRA-203ENST00000356147 ZCCHC11Q5TAX3 1644 aaKnown RBP12.63□□□□□ -0.39
PTPRA-203ENST00000356147 ATP7AQ04656 1500 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 FYB1O15117 783 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 PRKAR2BP31323 418 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 MCTP1Q6DN14 999 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 SIRT2Q8IXJ6 389 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 C16orf71Q8IYS4 520 aaPredicted RBP12.62□□□□□ -0.39
PTPRA-203ENST00000356147 PKNOX2Q96KN3 472 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 FANCAO15360 1455 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 NASPP49321 788 aaPredicted RBP12.62□□□□□ -0.39
PTPRA-203ENST00000356147 PHACTR3Q96KR7 559 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 KIF16BQ96L93 1317 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 AK9Q5TCS8 1911 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 DIAPH1O60610 1272 aaKnown RBP12.62□□□□□ -0.39
PTPRA-203ENST00000356147 BMP2KLQ5H9B9 411 aa12.62□□□□□ -0.39
PTPRA-203ENST00000356147 NCOA3Q9Y6Q9 1424 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 SHROOM2Q13796 1616 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 ANKRD36BQ8N2N9 1353 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 PPIP5K1Q6PFW1 1433 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 ZBTB7BO15156 539 aaPredicted RBP12.61□□□□□ -0.39
PTPRA-203ENST00000356147 RBM10P98175 930 aaKnown RBP12.61□□□□□ -0.39
PTPRA-203ENST00000356147 GLIPR1L2Q4G1C9 344 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 CAVIN1Q6NZI2 390 aaKnown RBP12.61□□□□□ -0.39
PTPRA-203ENST00000356147 QRICH2Q9H0J4 1663 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 KIAA1210Q9ULL0 1709 aa12.61□□□□□ -0.39
PTPRA-203ENST00000356147 KIAA1211Q6ZU35 1233 aa12.6□□□□□ -0.39
PTPRA-203ENST00000356147 BAG4O95429 457 aaKnown RBP12.6□□□□□ -0.39
PTPRA-203ENST00000356147 CT47B1P0C2W7 299 aaPredicted RBP12.6□□□□□ -0.39
PTPRA-203ENST00000356147 OTUD7AQ8TE49 926 aaPredicted RBP12.6□□□□□ -0.39
PTPRA-203ENST00000356147 KIF1BO60333 1816 aa12.6□□□□□ -0.39
PTPRA-203ENST00000356147 ADGRL1O94910 1474 aa12.59□□□□□ -0.39
PTPRA-203ENST00000356147 RBM27Q9P2N5 1060 aaKnown RBP12.59□□□□□ -0.39
PTPRA-203ENST00000356147 GSPT1P15170 499 aaKnown RBP12.59□□□□□ -0.39
PTPRA-203ENST00000356147 DCTN1Q14203 1278 aa12.59□□□□□ -0.39
PTPRA-203ENST00000356147 RRP9O43818 475 aaKnown RBP12.58□□□□□ -0.4
PTPRA-203ENST00000356147 CIZ1Q9ULV3 898 aaPredicted RBP12.58□□□□□ -0.4
PTPRA-203ENST00000356147 FAM83GA6ND36 823 aa12.58□□□□□ -0.4
PTPRA-203ENST00000356147 DEPDC5O75140 1603 aa12.58□□□□□ -0.4
PTPRA-203ENST00000356147 ABCC11Q96J66 1382 aa12.58□□□□□ -0.4
PTPRA-203ENST00000356147 TPRNQ4KMQ1 711 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 ZGPATQ8N5A5 531 aaKnown RBP12.57□□□□□ -0.4
PTPRA-203ENST00000356147 PRAM1Q96QH2 718 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 NPATQ14207 1427 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 GOLGA6L22H0YM25 854 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 SMARCA5O60264 1052 aaPredicted RBP12.57□□□□□ -0.4
PTPRA-203ENST00000356147 VAMP4O75379 141 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 CABP1Q9NZU7 370 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 TULP4Q9NRJ4 1543 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 PPRC1Q5VV67 1664 aaKnown RBP12.57□□□□□ -0.4
PTPRA-203ENST00000356147 MROH1Q8NDA8 1641 aa12.57□□□□□ -0.4
PTPRA-203ENST00000356147 SKOR2Q2VWA4 1001 aaPredicted RBP12.57□□□□□ -0.4
PTPRA-203ENST00000356147 FOXD4L6Q3SYB3 417 aaPredicted RBP12.56□□□□□ -0.4
PTPRA-203ENST00000356147 FOXD4L3Q6VB84 417 aaPredicted RBP12.56□□□□□ -0.4
PTPRA-203ENST00000356147 MRPL50Q8N5N7 158 aaKnown RBP12.56□□□□□ -0.4
PTPRA-203ENST00000356147 ADGRB1O14514 1584 aa12.56□□□□□ -0.4
PTPRA-203ENST00000356147 NRXN1Q9ULB1 1477 aa12.56□□□□□ -0.4
PTPRA-203ENST00000356147 KRT24Q2M2I5 525 aa12.56□□□□□ -0.4
PTPRA-203ENST00000356147 VWDEQ8N2E2 1590 aa12.56□□□□□ -0.4
PTPRA-203ENST00000356147 EFCAB6Q5THR3 1501 aa12.56□□□□□ -0.4
PTPRA-203ENST00000356147 PRPF40AO75400 957 aaKnown RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 MPNDQ8N594 471 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 C8orf58Q8NAV2 365 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 ANP32BQ92688 251 aaKnown RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 ADGRB2O60241 1585 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 CDC45O75419 566 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 NOL8Q76FK4 1167 aaKnown RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 MSNP26038 577 aaKnown RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 XPCQ01831 940 aaPredicted RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 GCC1Q96CN9 775 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 RBSNQ9H1K0 784 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 MBIPQ9NS73 344 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 ZRANB1Q9UGI0 708 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms