RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 NAIPQ13075 1403 aa12.06□□□□□ -0.48
CD44-205ENST00000352818 ANKRD50Q9ULJ7 1429 aa12.06□□□□□ -0.48
CD44-205ENST00000352818 DLC1Q96QB1 1528 aa12.05□□□□□ -0.48
CD44-205ENST00000352818 SPATA31A1Q5TZJ5 1347 aa12.05□□□□□ -0.48
CD44-205ENST00000352818 PRELPP51888 382 aa12.04□□□□□ -0.48
CD44-205ENST00000352818 PROM2Q8N271 834 aa12.04□□□□□ -0.48
CD44-205ENST00000352818 ZNF326Q5BKZ1 582 aaKnown RBP12.03□□□□□ -0.48
CD44-205ENST00000352818 DNAJC5GQ8N7S2 189 aa12.03□□□□□ -0.48
CD44-205ENST00000352818 SBNO1A3KN83 1393 aa12.03□□□□□ -0.48
CD44-205ENST00000352818 MAP3K5Q99683 1374 aa12.03□□□□□ -0.48
CD44-205ENST00000352818 RAB3GAP2Q9H2M9 1393 aa12.03□□□□□ -0.48
CD44-205ENST00000352818 PTF1AQ7RTS3 328 aa12.02□□□□□ -0.49
CD44-205ENST00000352818 WAPLQ7Z5K2 1190 aa12.01□□□□□ -0.49
CD44-205ENST00000352818 PLEKHH1Q9ULM0 1364 aa12.01□□□□□ -0.49
CD44-205ENST00000352818 TECPR2O15040 1411 aa12.01□□□□□ -0.49
CD44-205ENST00000352818 PCNTO95613 3336 aa12.01□□□□□ -0.49
CD44-205ENST00000352818 GPR162Q16538 588 aa12□□□□□ -0.49
CD44-205ENST00000352818 ARHGEF10O15013 1369 aa12□□□□□ -0.49
CD44-205ENST00000352818 COL14A1Q05707 1796 aaKnown RBP12□□□□□ -0.49
CD44-205ENST00000352818 FAM50AQ14320 339 aaKnown RBP11.99□□□□□ -0.49
CD44-205ENST00000352818 LMOD2Q6P5Q4 547 aa11.99□□□□□ -0.49
CD44-205ENST00000352818 ATP10DQ9P241 1426 aa11.99□□□□□ -0.49
CD44-205ENST00000352818 KIF1AQ12756 1690 aa11.98□□□□□ -0.49
CD44-205ENST00000352818 PLSCR1O15162 318 aa11.98□□□□□ -0.49
CD44-205ENST00000352818 MTFR1LQ9H019 292 aa11.98□□□□□ -0.49
CD44-205ENST00000352818 PSME1Q06323 249 aa11.97□□□□□ -0.49
CD44-205ENST00000352818 ARXQ96QS3 562 aa11.97□□□□□ -0.49
CD44-205ENST00000352818 PHF8Q9UPP1 1060 aa11.97□□□□□ -0.49
CD44-205ENST00000352818 NRXN1Q9ULB1 1477 aa11.96□□□□□ -0.49
CD44-205ENST00000352818 PDE3BQ13370 1112 aa11.96□□□□□ -0.49
CD44-205ENST00000352818 BARGINQ6ZT62 677 aa11.96□□□□□ -0.49
CD44-205ENST00000352818 FMN2Q9NZ56 1722 aa11.95□□□□□ -0.5
CD44-205ENST00000352818 YBX3P16989 372 aaKnown RBP eCLIP11.94□□□□□ -0.5
CD44-205ENST00000352818 TNS4Q8IZW8 715 aa11.94□□□□□ -0.5
CD44-205ENST00000352818 BCL11BQ9C0K0 894 aaPredicted RBP11.94□□□□□ -0.5
CD44-205ENST00000352818 PCDH10Q9P2E7 1040 aa11.94□□□□□ -0.5
CD44-205ENST00000352818 RGPD3A6NKT7 1758 aaPredicted RBP11.93□□□□□ -0.5
CD44-205ENST00000352818 RGPD4Q7Z3J3 1758 aa11.93□□□□□ -0.5
CD44-205ENST00000352818 ITGAEP38570 1179 aa11.93□□□□□ -0.5
CD44-205ENST00000352818 SLC15A2Q16348 729 aa11.93□□□□□ -0.5
CD44-205ENST00000352818 USP35Q9P2H5 1018 aa11.93□□□□□ -0.5
CD44-205ENST00000352818 ADCY9O60503 1353 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 PEAK1Q9H792 1746 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 CHRNA2Q15822 529 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 NLGN2Q8NFZ4 835 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 PRDM11Q9NQV5 511 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 STRN4Q9NRL3 753 aa11.92□□□□□ -0.5
CD44-205ENST00000352818 CLTCL1P53675 1640 aa11.91□□□□□ -0.5
CD44-205ENST00000352818 GPBP1L1Q9HC44 474 aaPredicted RBP11.91□□□□□ -0.5
CD44-205ENST00000352818 NUP155O75694 1391 aa11.91□□□□□ -0.5
CD44-205ENST00000352818 ROCK1Q13464 1354 aa11.91□□□□□ -0.5
CD44-205ENST00000352818 KIAA0232Q92628 1395 aa11.91□□□□□ -0.5
CD44-205ENST00000352818 KIF3CO14782 793 aa11.9□□□□□ -0.5
CD44-205ENST00000352818 VGFO15240 615 aaPredicted RBP11.9□□□□□ -0.5
CD44-205ENST00000352818 PELP1Q8IZL8 1130 aaKnown RBP11.9□□□□□ -0.5
CD44-205ENST00000352818 TRPM3Q9HCF6 1732 aaPredicted RBP11.9□□□□□ -0.5
CD44-205ENST00000352818 STK26Q9P289 416 aa11.9□□□□□ -0.5
CD44-205ENST00000352818 CRYBG1Q9Y4K1 1723 aa11.9□□□□□ -0.5
CD44-205ENST00000352818 ACIN1Q9UKV3 1341 aaKnown RBP11.89□□□□□ -0.51
CD44-205ENST00000352818 APLP1P51693 650 aa11.89□□□□□ -0.51
CD44-205ENST00000352818 LARP1Q6PKG0 1096 aaKnown RBP11.89□□□□□ -0.51
CD44-205ENST00000352818 PMFBP1Q8TBY8 1022 aa11.89□□□□□ -0.51
CD44-205ENST00000352818 STK32BQ9NY57 414 aa11.89□□□□□ -0.51
CD44-205ENST00000352818 ALS2Q96Q42 1657 aa11.89□□□□□ -0.51
CD44-205ENST00000352818 SSH2Q76I76 1423 aa11.88□□□□□ -0.51
CD44-205ENST00000352818 TXNRD1Q16881 649 aa11.88□□□□□ -0.51
CD44-205ENST00000352818 ZNF526Q8TF50 670 aaPredicted RBP11.88□□□□□ -0.51
CD44-205ENST00000352818 ABCC11Q96J66 1382 aa11.88□□□□□ -0.51
CD44-205ENST00000352818 TCP11L2Q8N4U5 519 aa11.87□□□□□ -0.51
CD44-205ENST00000352818 JMYQ8N9B5 988 aa11.87□□□□□ -0.51
CD44-205ENST00000352818 RGPD8O14715 1765 aaPredicted RBP11.87□□□□□ -0.51
CD44-205ENST00000352818 OVOS2A0A0G2JMS6 1433 aa11.86□□□□□ -0.51
CD44-205ENST00000352818 OVOS2A0A0J9YW53 1432 aa11.86□□□□□ -0.51
CD44-205ENST00000352818 OVOS2Q6IE36 1432 aa11.86□□□□□ -0.51
CD44-205ENST00000352818 ZNF316A6NFI3 1004 aaPredicted RBP11.85□□□□□ -0.51
CD44-205ENST00000352818 ATP7BP35670 1465 aa11.84□□□□□ -0.51
CD44-205ENST00000352818 HTRA3P83110 453 aa11.84□□□□□ -0.51
CD44-205ENST00000352818 TMEM132EQ6IEE7 984 aa11.84□□□□□ -0.51
CD44-205ENST00000352818 TIMELESSQ9UNS1 1208 aa11.84□□□□□ -0.51
CD44-205ENST00000352818 GRIN3BO60391 1043 aa11.83□□□□□ -0.52
CD44-205ENST00000352818 ZC3H6P61129 1189 aaKnown RBP11.83□□□□□ -0.52
CD44-205ENST00000352818 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
CD44-205ENST00000352818 SBF2Q86WG5 1849 aa11.83□□□□□ -0.52
CD44-205ENST00000352818 ADGRF5Q8IZF2 1346 aa11.83□□□□□ -0.52
CD44-205ENST00000352818 ZNF827Q17R98 1081 aa11.82□□□□□ -0.52
CD44-205ENST00000352818 KLRG1Q96E93 195 aa11.82□□□□□ -0.52
CD44-205ENST00000352818 PARP4Q9UKK3 1724 aaKnown RBP11.82□□□□□ -0.52
CD44-205ENST00000352818 AATKQ6ZMQ8 1374 aa11.81□□□□□ -0.52
CD44-205ENST00000352818 C11orf95C9JLR9 678 aaPredicted RBP11.81□□□□□ -0.52
CD44-205ENST00000352818 MARCH10Q8NA82 808 aaPredicted RBP11.81□□□□□ -0.52
CD44-205ENST00000352818 PAPPAQ13219 1627 aa11.81□□□□□ -0.52
CD44-205ENST00000352818 PHRF1Q9P1Y6 1649 aaKnown RBP11.81□□□□□ -0.52
CD44-205ENST00000352818 RPGRIP1LQ68CZ1 1315 aa11.81□□□□□ -0.52
CD44-205ENST00000352818 BCL9O00512 1426 aa11.8□□□□□ -0.52
CD44-205ENST00000352818 WWC3Q9ULE0 1092 aa11.8□□□□□ -0.52
CD44-205ENST00000352818 THRAP3Q9Y2W1 955 aaKnown RBP11.8□□□□□ -0.52
CD44-205ENST00000352818 IFT172Q9UG01 1749 aa11.8□□□□□ -0.52
CD44-205ENST00000352818 EVA1CP58658 441 aa11.79□□□□□ -0.52
CD44-205ENST00000352818 PRR36Q9H6K5 1346 aa11.79□□□□□ -0.52
CD44-205ENST00000352818 KNDC1Q76NI1 1749 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms