RNA–Protein interactions for RNA: ENST00000344550.4

CEACAM3-201, Transcript of carcinoembryonic antigen related cell adhesion molecule 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CEACAM3, Length 1,022 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CEACAM3-201ENST00000344550 ACEP12821 1306 aa28.59■■■□□ 2.17
CEACAM3-201ENST00000344550 EVC2Q86UK5 1308 aa28.59■■■□□ 2.17
CEACAM3-201ENST00000344550 ABCA3Q99758 1704 aa28.57■■■□□ 2.16
CEACAM3-201ENST00000344550 PAK3O75914 559 aaPredicted RBP28.57■■■□□ 2.16
CEACAM3-201ENST00000344550 UPF1Q92900 1129 aaKnown RBP eCLIP28.56■■■□□ 2.16
CEACAM3-201ENST00000344550 NWD2Q9ULI1 1742 aa28.56■■■□□ 2.16
CEACAM3-201ENST00000344550 PPIP5K1Q6PFW1 1433 aa28.54■■■□□ 2.16
CEACAM3-201ENST00000344550 SBNO2Q9Y2G9 1366 aa28.54■■■□□ 2.16
CEACAM3-201ENST00000344550 VPS72Q15906 364 aa28.53■■■□□ 2.16
CEACAM3-201ENST00000344550 CABP2Q9NPB3 220 aa28.53■■■□□ 2.16
CEACAM3-201ENST00000344550 FAM83GA6ND36 823 aa28.52■■■□□ 2.16
CEACAM3-201ENST00000344550 RALGAPBQ86X10 1494 aa28.52■■■□□ 2.16
CEACAM3-201ENST00000344550 CARD11Q9BXL7 1154 aa28.5■■■□□ 2.15
CEACAM3-201ENST00000344550 ATAD2Q6PL18 1390 aa28.5■■■□□ 2.15
CEACAM3-201ENST00000344550 CABP1Q9NZU7 370 aa28.47■■■□□ 2.15
CEACAM3-201ENST00000344550 COL14A1Q05707 1796 aaKnown RBP28.47■■■□□ 2.15
CEACAM3-201ENST00000344550 CRYBG1Q9Y4K1 1723 aa28.46■■■□□ 2.15
CEACAM3-201ENST00000344550 PLCH1Q4KWH8 1693 aa28.46■■■□□ 2.15
CEACAM3-201ENST00000344550 ONECUT3O60422 494 aaPredicted RBP28.46■■■□□ 2.15
CEACAM3-201ENST00000344550 ZNF692Q9BU19 519 aaPredicted RBP28.46■■■□□ 2.15
CEACAM3-201ENST00000344550 CLSPNQ9HAW4 1339 aa28.45■■■□□ 2.15
CEACAM3-201ENST00000344550 SLC24A1O60721 1099 aa28.45■■■□□ 2.14
CEACAM3-201ENST00000344550 ABTB2Q8N961 1025 aa28.45■■■□□ 2.14
CEACAM3-201ENST00000344550 PLEKHG5O94827 1062 aa28.44■■■□□ 2.14
CEACAM3-201ENST00000344550 NLRP13Q86W25 1043 aa28.44■■■□□ 2.14
CEACAM3-201ENST00000344550 PRDM11Q9NQV5 511 aa28.43■■■□□ 2.14
CEACAM3-201ENST00000344550 BTG4Q9NY30 223 aa28.43■■■□□ 2.14
CEACAM3-201ENST00000344550 TIMELESSQ9UNS1 1208 aa28.43■■■□□ 2.14
CEACAM3-201ENST00000344550 USP6P35125 1406 aa28.43■■■□□ 2.14
CEACAM3-201ENST00000344550 GLI3P10071 1580 aa28.42■■■□□ 2.14
CEACAM3-201ENST00000344550 USP19O94966 1318 aa28.42■■■□□ 2.14
CEACAM3-201ENST00000344550 PUS7Q96PZ0 661 aaKnown RBP28.41■■■□□ 2.14
CEACAM3-201ENST00000344550 CCDC125Q86Z20 511 aa28.4■■■□□ 2.14
CEACAM3-201ENST00000344550 CPDO75976 1380 aa28.38■■■□□ 2.13
CEACAM3-201ENST00000344550 SSH2Q76I76 1423 aa28.38■■■□□ 2.13
CEACAM3-201ENST00000344550 KIAA0232Q92628 1395 aa28.37■■■□□ 2.13
CEACAM3-201ENST00000344550 PHRF1Q9P1Y6 1649 aaKnown RBP28.37■■■□□ 2.13
CEACAM3-201ENST00000344550 CCDC9Q9Y3X0 531 aaKnown RBP28.37■■■□□ 2.13
CEACAM3-201ENST00000344550 NRAPQ86VF7 1730 aa28.37■■■□□ 2.13
CEACAM3-201ENST00000344550 NUTM2GQ5VZR2 741 aa28.34■■■□□ 2.13
CEACAM3-201ENST00000344550 SEPT12Q8IYM1 358 aa28.34■■■□□ 2.13
CEACAM3-201ENST00000344550 CPSF1Q10570 1443 aaKnown RBP28.34■■■□□ 2.13
CEACAM3-201ENST00000344550 GCP02774 474 aa28.33■■■□□ 2.13
CEACAM3-201ENST00000344550 SPATA31A5Q5VU36 1347 aa28.33■■■□□ 2.13
CEACAM3-201ENST00000344550 SPATA31A7Q8IWB4 1347 aa28.33■■■□□ 2.13
CEACAM3-201ENST00000344550 TTC21AQ8NDW8 1320 aa28.33■■■□□ 2.13
CEACAM3-201ENST00000344550 ZC3H6P61129 1189 aaKnown RBP28.32■■■□□ 2.12
CEACAM3-201ENST00000344550 NLRP6P59044 892 aa28.31■■■□□ 2.12
CEACAM3-201ENST00000344550 NRKQ7Z2Y5 1582 aa28.3■■■□□ 2.12
CEACAM3-201ENST00000344550 TTC21BQ7Z4L5 1316 aa28.28■■■□□ 2.12
CEACAM3-201ENST00000344550 AKAP12Q02952 1782 aa28.27■■■□□ 2.12
CEACAM3-201ENST00000344550 KTN1Q86UP2 1357 aaKnown RBP28.26■■■□□ 2.12
CEACAM3-201ENST00000344550 CHRNA2Q15822 529 aa28.26■■■□□ 2.11
CEACAM3-201ENST00000344550 SLIT3O75094 1523 aa28.26■■■□□ 2.11
CEACAM3-201ENST00000344550 NINLQ9Y2I6 1382 aa28.25■■■□□ 2.11
CEACAM3-201ENST00000344550 KRT27Q7Z3Y8 459 aa28.25■■■□□ 2.11
CEACAM3-201ENST00000344550 KCNH5Q8NCM2 988 aa28.25■■■□□ 2.11
CEACAM3-201ENST00000344550 TESK2Q96S53 571 aa28.25■■■□□ 2.11
CEACAM3-201ENST00000344550 SPATA31A1Q5TZJ5 1347 aa28.24■■■□□ 2.11
CEACAM3-201ENST00000344550 EVA1CP58658 441 aa28.24■■■□□ 2.11
CEACAM3-201ENST00000344550 FAM98CQ17RN3 349 aaKnown RBP28.24■■■□□ 2.11
CEACAM3-201ENST00000344550 EP400Q96L91 3159 aa28.24■■■□□ 2.11
CEACAM3-201ENST00000344550 ST20-MTHFSA0A0A6YYL1 179 aa28.23■■■□□ 2.11
CEACAM3-201ENST00000344550 AATKQ6ZMQ8 1374 aa28.23■■■□□ 2.11
CEACAM3-201ENST00000344550 HDGFL2Q7Z4V5 671 aaPredicted RBP28.22■■■□□ 2.11
CEACAM3-201ENST00000344550 TERF2IPQ9NYB0 399 aa28.22■■■□□ 2.11
CEACAM3-201ENST00000344550 PIK3C2AO00443 1686 aa28.22■■■□□ 2.11
CEACAM3-201ENST00000344550 LMO7Q8WWI1 1683 aa28.22■■■□□ 2.11
CEACAM3-201ENST00000344550 BLMP54132 1417 aaPredicted RBP28.21■■■□□ 2.11
CEACAM3-201ENST00000344550 BRWD3Q6RI45 1802 aa28.2■■■□□ 2.11
CEACAM3-201ENST00000344550 CAMTA1Q9Y6Y1 1673 aa28.2■■■□□ 2.11
CEACAM3-201ENST00000344550 BARGINQ6ZT62 677 aa28.2■■■□□ 2.1
CEACAM3-201ENST00000344550 PCGF6Q9BYE7 350 aa28.2■■■□□ 2.1
CEACAM3-201ENST00000344550 STRN4Q9NRL3 753 aa28.19■■■□□ 2.1
CEACAM3-201ENST00000344550 THRAP3Q9Y2W1 955 aaKnown RBP28.19■■■□□ 2.1
CEACAM3-201ENST00000344550 MON2Q7Z3U7 1717 aa28.18■■■□□ 2.1
CEACAM3-201ENST00000344550 A0A0G2JS52 829 aa28.18■■■□□ 2.1
CEACAM3-201ENST00000344550 MYT1Q01538 1121 aa28.18■■■□□ 2.1
CEACAM3-201ENST00000344550 TMC1Q8TDI8 760 aa28.18■■■□□ 2.1
CEACAM3-201ENST00000344550 USP31Q70CQ4 1352 aa28.18■■■□□ 2.1
CEACAM3-201ENST00000344550 CD163L1Q9NR16 1453 aa28.17■■■□□ 2.1
CEACAM3-201ENST00000344550 THSD7AQ9UPZ6 1657 aa28.16■■■□□ 2.1
CEACAM3-201ENST00000344550 SLC12A5Q9H2X9 1139 aa28.16■■■□□ 2.1
CEACAM3-201ENST00000344550 EDC4Q6P2E9 1401 aaKnown RBP28.16■■■□□ 2.1
CEACAM3-201ENST00000344550 USP47Q96K76 1375 aa28.15■■■□□ 2.1
CEACAM3-201ENST00000344550 COL5A2P05997 1499 aaPredicted RBP28.15■■■□□ 2.1
CEACAM3-201ENST00000344550 ARHGEF25Q86VW2 580 aa28.14■■■□□ 2.1
CEACAM3-201ENST00000344550 TCP11L2Q8N4U5 519 aa28.14■■■□□ 2.1
CEACAM3-201ENST00000344550 TMF1P82094 1093 aa28.13■■■□□ 2.09
CEACAM3-201ENST00000344550 SF3B2Q13435 895 aaKnown RBP28.13■■■□□ 2.09
CEACAM3-201ENST00000344550 CDCA8Q53HL2 280 aa28.13■■■□□ 2.09
CEACAM3-201ENST00000344550 LARP1Q6PKG0 1096 aaKnown RBP28.12■■■□□ 2.09
CEACAM3-201ENST00000344550 USP54Q70EL1 1684 aa28.11■■■□□ 2.09
CEACAM3-201ENST00000344550 ABCC6O95255 1503 aa28.11■■■□□ 2.09
CEACAM3-201ENST00000344550 CRB1P82279 1406 aa28.1■■■□□ 2.09
CEACAM3-201ENST00000344550 A0A1W2PP64 1363 aa28.09■■■□□ 2.09
CEACAM3-201ENST00000344550 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.08■■■□□ 2.09
CEACAM3-201ENST00000344550 C11orf95C9JLR9 678 aaPredicted RBP28.07■■■□□ 2.08
CEACAM3-201ENST00000344550 NFAT5O94916 1531 aa28.07■■■□□ 2.08
CEACAM3-201ENST00000344550 COL18A1P39060 1754 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms