RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 KANK4Q5T7N3 995 aaPredicted RBP10.4□□□□□ -0.74
TDP1-201ENST00000335725 SMC5Q8IY18 1101 aa10.4□□□□□ -0.74
TDP1-201ENST00000335725 EIF4G1Q04637 1599 aaKnown RBP10.4□□□□□ -0.74
TDP1-201ENST00000335725 ZSCAN23Q3MJ62 389 aa10.4□□□□□ -0.74
TDP1-201ENST00000335725 CTAGE5O15320 804 aa10.4□□□□□ -0.75
TDP1-201ENST00000335725 NCOA3Q9Y6Q9 1424 aa10.39□□□□□ -0.75
TDP1-201ENST00000335725 DDIT3P35638 169 aa10.39□□□□□ -0.75
TDP1-201ENST00000335725 CLEC17AQ6ZS10 378 aa10.39□□□□□ -0.75
TDP1-201ENST00000335725 IPO7O95373 1038 aaKnown RBP10.39□□□□□ -0.75
TDP1-201ENST00000335725 NCBP1Q09161 790 aaKnown RBP10.39□□□□□ -0.75
TDP1-201ENST00000335725 SUGP1Q8IWZ8 645 aaKnown RBP10.39□□□□□ -0.75
TDP1-201ENST00000335725 ZNF397Q8NF99 534 aaPredicted RBP10.39□□□□□ -0.75
TDP1-201ENST00000335725 POLKQ9UBT6 870 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 TPM3P06753 285 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 TBC1D22AQ8WUA7 517 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 PAXBP1Q9Y5B6 917 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 PPP2R5AQ15172 486 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 C11orf91Q3C1V1 193 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 MCTP2Q6DN12 878 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 CEP89Q96ST8 783 aa10.38□□□□□ -0.75
TDP1-201ENST00000335725 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.38□□□□□ -0.75
TDP1-201ENST00000335725 NRDCO43847 1150 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 SYT10Q6XYQ8 523 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 NUCKS1Q9H1E3 243 aaKnown RBP10.37□□□□□ -0.75
TDP1-201ENST00000335725 EIF3AQ14152 1382 aaKnown RBP10.37□□□□□ -0.75
TDP1-201ENST00000335725 TACO1Q9BSH4 297 aaKnown RBP10.37□□□□□ -0.75
TDP1-201ENST00000335725 BRD4O60885 1362 aaPredicted RBP10.37□□□□□ -0.75
TDP1-201ENST00000335725 GYS2P54840 703 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 MTA1Q13330 715 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 SNX21Q969T3 373 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 C22orf23Q9BZE7 217 aa10.37□□□□□ -0.75
TDP1-201ENST00000335725 LRSAM1Q6UWE0 723 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 FAM53CQ9NYF3 392 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 ARHGAP31Q2M1Z3 1444 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 HTATSF1O43719 755 aaKnown RBP10.36□□□□□ -0.75
TDP1-201ENST00000335725 CAVIN1Q6NZI2 390 aaKnown RBP10.36□□□□□ -0.75
TDP1-201ENST00000335725 ZBTB7CA1YPR0 619 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 PRIM1P49642 420 aaKnown RBP10.36□□□□□ -0.75
TDP1-201ENST00000335725 TPM4P67936 248 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 NUCB2P80303 420 aa10.36□□□□□ -0.75
TDP1-201ENST00000335725 BMS1Q14692 1282 aaKnown RBP10.35□□□□□ -0.75
TDP1-201ENST00000335725 MAGEA9P43362 315 aa10.35□□□□□ -0.75
TDP1-201ENST00000335725 FAM184AQ8NB25 1140 aa10.35□□□□□ -0.75
TDP1-201ENST00000335725 CWC22Q9HCG8 908 aaKnown RBP10.35□□□□□ -0.75
TDP1-201ENST00000335725 NEFHP12036 1026 aa10.35□□□□□ -0.75
TDP1-201ENST00000335725 SART3Q15020 963 aaKnown RBP10.35□□□□□ -0.75
TDP1-201ENST00000335725 KRBA2Q6ZNG9 492 aa10.35□□□□□ -0.75
TDP1-201ENST00000335725 CCDC191Q8NCU4 936 aa10.35□□□□□ -0.75
TDP1-201ENST00000335725 SMTNL1A8MU46 457 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 HDAC1Q13547 482 aaPredicted RBP10.34□□□□□ -0.75
TDP1-201ENST00000335725 IPO8O15397 1037 aaKnown RBP10.34□□□□□ -0.75
TDP1-201ENST00000335725 ANKRD23Q86SG2 305 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 SRLQ86TD4 932 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 KIF1BPQ96EK5 621 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 IRX1P78414 480 aaPredicted RBP10.34□□□□□ -0.75
TDP1-201ENST00000335725 SETDB1Q15047 1291 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 PPM1EQ8WY54 764 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 FAM212AQ96EL1 285 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 RUSC2Q8N2Y8 1516 aa10.34□□□□□ -0.75
TDP1-201ENST00000335725 CCDC96Q2M329 555 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 UVSSAQ2YD98 709 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 ZC3H12AQ5D1E8 599 aaKnown RBP10.33□□□□□ -0.76
TDP1-201ENST00000335725 RNF20Q5VTR2 975 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 V9GYY5 206 aaPredicted RBP10.33□□□□□ -0.76
TDP1-201ENST00000335725 TRIM66O15016 1216 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 JAKMIP3Q5VZ66 844 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 BORCS6Q96GS4 357 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.33□□□□□ -0.762e-9■■■■■ 223.6
TDP1-201ENST00000335725 KIF7Q2M1P5 1343 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 ERCC3P19447 782 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 ZNF446Q9NWS9 450 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 RRP15Q9Y3B9 282 aaKnown RBP10.33□□□□□ -0.76
TDP1-201ENST00000335725 PLEKHH2Q8IVE3 1493 aa10.33□□□□□ -0.76
TDP1-201ENST00000335725 ZSCAN26Q16670 478 aa10.32□□□□□ -0.76
TDP1-201ENST00000335725 ERCC4Q92889 916 aaPredicted RBP10.32□□□□□ -0.76
TDP1-201ENST00000335725 SUDS3Q9H7L9 328 aaPredicted RBP10.32□□□□□ -0.76
TDP1-201ENST00000335725 BAG4O95429 457 aaKnown RBP10.32□□□□□ -0.76
TDP1-201ENST00000335725 USP8P40818 1118 aa10.32□□□□□ -0.76
TDP1-201ENST00000335725 MAP9Q49MG5 647 aa10.32□□□□□ -0.76
TDP1-201ENST00000335725 SLFNL1Q499Z3 407 aa10.32□□□□□ -0.76
TDP1-201ENST00000335725 MMS22LQ6ZRQ5 1243 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 GOLGA5Q8TBA6 731 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 ATG3Q9NT62 314 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 KANK1Q14678 1352 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 DHX29Q7Z478 1369 aaKnown RBP10.31□□□□□ -0.76
TDP1-201ENST00000335725 TPM1P09493 284 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 TSHZ1Q6ZSZ6 1077 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 LRRFIP2Q9Y608 721 aaKnown RBP10.31□□□□□ -0.76
TDP1-201ENST00000335725 INSRP06213 1382 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 CCDC112Q8NEF3 446 aa10.31□□□□□ -0.76
TDP1-201ENST00000335725 IVLP07476 585 aa10.3□□□□□ -0.76
TDP1-201ENST00000335725 AK7Q96M32 723 aa10.3□□□□□ -0.76
TDP1-201ENST00000335725 FAM50AQ14320 339 aaKnown RBP10.3□□□□□ -0.76
TDP1-201ENST00000335725 PLEKHG2Q9H7P9 1386 aa10.3□□□□□ -0.76
TDP1-201ENST00000335725 FBXO18Q8NFZ0 1043 aa10.3□□□□□ -0.76
TDP1-201ENST00000335725 ANAPC4Q9UJX5 808 aa10.3□□□□□ -0.76
TDP1-201ENST00000335725 POLR1AO95602 1720 aaPredicted RBP10.29□□□□□ -0.76
TDP1-201ENST00000335725 MYBBP1AQ9BQG0 1328 aaKnown RBP10.29□□□□□ -0.76
TDP1-201ENST00000335725 SENP3-EIF4A1A0A087X0R7 540 aa10.29□□□□□ -0.76
TDP1-201ENST00000335725 E2F4Q16254 413 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms