RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 EXOSC9Q06265 439 aaKnown RBP15.74■□□□□ 0.11
VPS33B-201ENST00000333371 POGKQ9P215 609 aa15.74■□□□□ 0.11
VPS33B-201ENST00000333371 SRPK2P78362 688 aaKnown RBP15.73■□□□□ 0.11
VPS33B-201ENST00000333371 SPRYD3Q8NCJ5 442 aa15.73■□□□□ 0.11
VPS33B-201ENST00000333371 A0A1W2PP64 1363 aa15.73■□□□□ 0.11
VPS33B-201ENST00000333371 PUS7Q96PZ0 661 aaKnown RBP15.73■□□□□ 0.11
VPS33B-201ENST00000333371 MYH16Q9H6N6 1097 aa15.73■□□□□ 0.11
VPS33B-201ENST00000333371 MVPQ14764 893 aaKnown RBP15.72■□□□□ 0.11
VPS33B-201ENST00000333371 CCDC27Q2M243 656 aa15.72■□□□□ 0.11
VPS33B-201ENST00000333371 FTSJ3Q8IY81 847 aaKnown RBP15.72■□□□□ 0.11
VPS33B-201ENST00000333371 SMC4Q9NTJ3 1288 aa15.71■□□□□ 0.11
VPS33B-201ENST00000333371 MINK1Q8N4C8 1332 aaPredicted RBP15.71■□□□□ 0.11
VPS33B-201ENST00000333371 YTHDC2Q9H6S0 1430 aaKnown RBP15.71■□□□□ 0.11
VPS33B-201ENST00000333371 SPATA31D1Q6ZQQ2 1576 aa15.71■□□□□ 0.11
VPS33B-201ENST00000333371 PRAM1Q96QH2 718 aa15.71■□□□□ 0.11
VPS33B-201ENST00000333371 ZKSCAN2Q63HK3 967 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 DZIP1LQ8IYY4 767 aaKnown RBP15.7■□□□□ 0.1
VPS33B-201ENST00000333371 RWDD1Q9H446 243 aaPredicted RBP15.7■□□□□ 0.1
VPS33B-201ENST00000333371 ALKQ9UM73 1620 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 FBLN1P23142 703 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 SSH1Q8WYL5 1049 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 TRIM35Q9UPQ4 493 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 TRIM27P14373 513 aa15.7■□□□□ 0.1
VPS33B-201ENST00000333371 TMPOP42166 694 aaKnown RBP15.7■□□□□ 0.1
VPS33B-201ENST00000333371 ADGRB2O60241 1585 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 TBC1D32Q96NH3 1257 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 PLEKHF1Q96S99 279 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 A2ML1A8K2U0 1454 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 PTPRMP28827 1452 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 BECN1Q14457 450 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 TBC1D2Q9BYX2 928 aa15.69■□□□□ 0.1
VPS33B-201ENST00000333371 RIMS2Q9UQ26 1411 aa15.68■□□□□ 0.1
VPS33B-201ENST00000333371 ITPRIPQ8IWB1 547 aa15.68■□□□□ 0.1
VPS33B-201ENST00000333371 FYB1O15117 783 aa15.67■□□□□ 0.1
VPS33B-201ENST00000333371 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.67■□□□□ 0.1
VPS33B-201ENST00000333371 ZMYM3Q14202 1370 aa15.67■□□□□ 0.1
VPS33B-201ENST00000333371 ANTXR1Q9H6X2 564 aa15.66■□□□□ 0.1
VPS33B-201ENST00000333371 UPF2Q9HAU5 1272 aaKnown RBP15.66■□□□□ 0.1
VPS33B-201ENST00000333371 NOB1Q9ULX3 412 aaKnown RBP15.66■□□□□ 0.1
VPS33B-201ENST00000333371 ABCC11Q96J66 1382 aa15.66■□□□□ 0.1
VPS33B-201ENST00000333371 MFAP1P55081 439 aaKnown RBP15.65■□□□□ 0.1
VPS33B-201ENST00000333371 NSD2O96028 1365 aa15.65■□□□□ 0.1
VPS33B-201ENST00000333371 ATAD2Q6PL18 1390 aa15.65■□□□□ 0.1
VPS33B-201ENST00000333371 RIPK4P57078 832 aa15.65■□□□□ 0.1
VPS33B-201ENST00000333371 TMEM57Q8N5G2 664 aa15.64■□□□□ 0.09
VPS33B-201ENST00000333371 COL3A1P02461 1466 aaPredicted RBP15.64■□□□□ 0.09
VPS33B-201ENST00000333371 ARXQ96QS3 562 aa15.64■□□□□ 0.09
VPS33B-201ENST00000333371 TERF2IPQ9NYB0 399 aa15.64■□□□□ 0.09
VPS33B-201ENST00000333371 AAMPQ13685 434 aa15.63■□□□□ 0.09
VPS33B-201ENST00000333371 ATF7IPQ6VMQ6 1270 aa15.63■□□□□ 0.09
VPS33B-201ENST00000333371 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS33B-201ENST00000333371 CDK19Q9BWU1 502 aa15.62■□□□□ 0.09
VPS33B-201ENST00000333371 CD163L1Q9NR16 1453 aa15.62■□□□□ 0.09
VPS33B-201ENST00000333371 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.61■□□□□ 0.09
VPS33B-201ENST00000333371 HDGFP51858 240 aaKnown RBP15.61■□□□□ 0.09
VPS33B-201ENST00000333371 HDGFL2Q7Z4V5 671 aaPredicted RBP15.6■□□□□ 0.09
VPS33B-201ENST00000333371 THUMPD2Q9BTF0 503 aaKnown RBP15.6■□□□□ 0.09
VPS33B-201ENST00000333371 CABP1Q9NZU7 370 aa15.6■□□□□ 0.09
VPS33B-201ENST00000333371 TNRQ92752 1358 aa15.6■□□□□ 0.09
VPS33B-201ENST00000333371 DIAPH1O60610 1272 aaKnown RBP15.6■□□□□ 0.09
VPS33B-201ENST00000333371 C22orf23Q9BZE7 217 aa15.6■□□□□ 0.09
VPS33B-201ENST00000333371 WAPLQ7Z5K2 1190 aa15.59■□□□□ 0.09
VPS33B-201ENST00000333371 DDX19BQ9UMR2 479 aa15.59■□□□□ 0.09
VPS33B-201ENST00000333371 SETD1AO15047 1707 aaKnown RBP15.58■□□□□ 0.09
VPS33B-201ENST00000333371 DLC1Q96QB1 1528 aa15.58■□□□□ 0.08
VPS33B-201ENST00000333371 HMOX1P09601 288 aa15.58■□□□□ 0.08
VPS33B-201ENST00000333371 LNPKQ9C0E8 428 aa15.58■□□□□ 0.08
VPS33B-201ENST00000333371 ANKRD26Q9UPS8 1709 aa15.58■□□□□ 0.08
VPS33B-201ENST00000333371 HDAC1Q13547 482 aaPredicted RBP15.58■□□□□ 0.08
VPS33B-201ENST00000333371 ZBTB40Q9NUA8 1239 aa15.58■□□□□ 0.08
VPS33B-201ENST00000333371 C1orf115Q9H7X2 142 aa15.57■□□□□ 0.08
VPS33B-201ENST00000333371 ELL2O00472 640 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-201ENST00000333371 CT47B1P0C2W7 299 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-201ENST00000333371 PRKAR2BP31323 418 aa15.57■□□□□ 0.08
VPS33B-201ENST00000333371 GZF1Q9H116 711 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-201ENST00000333371 NCBP3Q53F19 620 aaKnown RBP15.56■□□□□ 0.08
VPS33B-201ENST00000333371 PHACTR3Q96KR7 559 aa15.56■□□□□ 0.08
VPS33B-201ENST00000333371 LRRC7Q96NW7 1537 aa15.56■□□□□ 0.08
VPS33B-201ENST00000333371 SMC5Q8IY18 1101 aa15.56■□□□□ 0.08
VPS33B-201ENST00000333371 NRXN3Q9Y4C0 1643 aa15.55■□□□□ 0.08
VPS33B-201ENST00000333371 MAP2P11137 1827 aaKnown RBP15.55■□□□□ 0.08
VPS33B-201ENST00000333371 TSPYL6Q8N831 410 aa15.54■□□□□ 0.08
VPS33B-201ENST00000333371 METP08581 1390 aa15.54■□□□□ 0.08
VPS33B-201ENST00000333371 KIF20BQ96Q89 1820 aa15.54■□□□□ 0.08
VPS33B-201ENST00000333371 TXNDC2Q86VQ3 553 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 POLKQ9UBT6 870 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 ZRANB1Q9UGI0 708 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 IL16Q14005 1332 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 UBR1Q8IWV7 1749 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 RSPH6AQ9H0K4 717 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 EMILIN1Q9Y6C2 1016 aa15.53■□□□□ 0.08
VPS33B-201ENST00000333371 PLPPR3Q6T4P5 718 aa15.52■□□□□ 0.08
VPS33B-201ENST00000333371 PNPLA6Q8IY17 1366 aa15.52■□□□□ 0.07
VPS33B-201ENST00000333371 TMEM2Q9UHN6 1383 aa15.52■□□□□ 0.07
VPS33B-201ENST00000333371 KIF16BQ96L93 1317 aa15.51■□□□□ 0.07
VPS33B-201ENST00000333371 MCM4P33991 863 aa15.51■□□□□ 0.07
VPS33B-201ENST00000333371 NUCB1Q02818 461 aa15.51■□□□□ 0.07
VPS33B-201ENST00000333371 WASLO00401 505 aaPredicted RBP15.5■□□□□ 0.07
VPS33B-201ENST00000333371 IPO8O15397 1037 aaKnown RBP15.5■□□□□ 0.07
VPS33B-201ENST00000333371 MED14O60244 1454 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms