RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 TTC21AQ8NDW8 1320 aa37.21■■■■□ 3.55
CTDNEP1-201ENST00000318988 GGNBP2Q9H3C7 697 aa37.2■■■■□ 3.55
CTDNEP1-201ENST00000318988 MYBBP1AQ9BQG0 1328 aaKnown RBP37.18■■■■□ 3.54
CTDNEP1-201ENST00000318988 CCER2I3L3R5 266 aa37.17■■■■□ 3.54
CTDNEP1-201ENST00000318988 PAK3O75914 559 aaPredicted RBP37.17■■■■□ 3.54
CTDNEP1-201ENST00000318988 BRINP3Q76B58 766 aa37.17■■■■□ 3.54
CTDNEP1-201ENST00000318988 SSH2Q76I76 1423 aa37.16■■■■□ 3.54
CTDNEP1-201ENST00000318988 NME9Q86XW9 330 aa37.16■■■■□ 3.54
CTDNEP1-201ENST00000318988 NPHP3Q7Z494 1330 aa37.15■■■■□ 3.54
CTDNEP1-201ENST00000318988 NRKQ7Z2Y5 1582 aa37.15■■■■□ 3.54
CTDNEP1-201ENST00000318988 KRT28Q7Z3Y7 464 aa37.15■■■■□ 3.54
CTDNEP1-201ENST00000318988 KIF20BQ96Q89 1820 aa37.14■■■■□ 3.54
CTDNEP1-201ENST00000318988 COG3Q96JB2 828 aa37.13■■■■□ 3.53
CTDNEP1-201ENST00000318988 XPCQ01831 940 aaPredicted RBP37.11■■■■□ 3.53
CTDNEP1-201ENST00000318988 TOM1O60784 492 aa37.1■■■■□ 3.53
CTDNEP1-201ENST00000318988 TNNT2P45379 298 aaPredicted RBP37.09■■■■□ 3.53
CTDNEP1-201ENST00000318988 ABTB2Q8N961 1025 aa37.08■■■■□ 3.53
CTDNEP1-201ENST00000318988 NLRP13Q86W25 1043 aa37.07■■■■□ 3.53
CTDNEP1-201ENST00000318988 IQSEC2Q5JU85 1478 aa37.07■■■■□ 3.52
CTDNEP1-201ENST00000318988 PPP2R1AP30153 589 aa37.05■■■■□ 3.52
CTDNEP1-201ENST00000318988 CERKQ8TCT0 537 aa37.05■■■■□ 3.52
CTDNEP1-201ENST00000318988 ZRANB1Q9UGI0 708 aa37.05■■■■□ 3.52
CTDNEP1-201ENST00000318988 ANKRD26Q9UPS8 1709 aa37.05■■■■□ 3.52
CTDNEP1-201ENST00000318988 DDX17Q92841 729 aaKnown RBP37.05■■■■□ 3.52
CTDNEP1-201ENST00000318988 NLRP6P59044 892 aa37.03■■■■□ 3.52
CTDNEP1-201ENST00000318988 LMOD2Q6P5Q4 547 aa37.01■■■■□ 3.52
CTDNEP1-201ENST00000318988 MRS2Q9HD23 443 aa37.01■■■■□ 3.52
CTDNEP1-201ENST00000318988 UBAP1LF5GYI3 381 aa37■■■■□ 3.51
CTDNEP1-201ENST00000318988 USP31Q70CQ4 1352 aa37■■■■□ 3.51
CTDNEP1-201ENST00000318988 SBNO1A3KN83 1393 aa36.99■■■■□ 3.51
CTDNEP1-201ENST00000318988 SCAF1Q9H7N4 1312 aaKnown RBP36.98■■■■□ 3.51
CTDNEP1-201ENST00000318988 NUTM2GQ5VZR2 741 aa36.98■■■■□ 3.51
CTDNEP1-201ENST00000318988 OVOS2A0A0J9YW53 1432 aa36.97■■■■□ 3.51
CTDNEP1-201ENST00000318988 OVOS2Q6IE36 1432 aa36.97■■■■□ 3.51
CTDNEP1-201ENST00000318988 PIK3C2AO00443 1686 aa36.96■■■■□ 3.51
CTDNEP1-201ENST00000318988 PXDNQ92626 1479 aa36.95■■■■□ 3.51
CTDNEP1-201ENST00000318988 TRPM3Q9HCF6 1732 aaPredicted RBP36.94■■■■□ 3.5
CTDNEP1-201ENST00000318988 PIP4K2BP78356 416 aa36.94■■■■□ 3.5
CTDNEP1-201ENST00000318988 SOS2Q07890 1332 aaPredicted RBP36.93■■■■□ 3.5
CTDNEP1-201ENST00000318988 ROBO1Q9Y6N7 1651 aa36.92■■■■□ 3.5
CTDNEP1-201ENST00000318988 CCDC184Q52MB2 194 aa36.92■■■■□ 3.5
CTDNEP1-201ENST00000318988 TNS3Q68CZ2 1445 aa36.9■■■■□ 3.5
CTDNEP1-201ENST00000318988 MTHFSP49914 203 aa36.89■■■■□ 3.5
CTDNEP1-201ENST00000318988 SPATA31A3Q5VYP0 1347 aa36.89■■■■□ 3.5
CTDNEP1-201ENST00000318988 ARHGEF10O15013 1369 aa36.88■■■■□ 3.49
CTDNEP1-201ENST00000318988 AATKQ6ZMQ8 1374 aa36.88■■■■□ 3.49
CTDNEP1-201ENST00000318988 NHSL1Q5SYE7 1610 aa36.87■■■■□ 3.49
CTDNEP1-201ENST00000318988 SOX12O15370 315 aa36.87■■■■□ 3.49
CTDNEP1-201ENST00000318988 CFAP53Q96M91 514 aa36.87■■■■□ 3.49
CTDNEP1-201ENST00000318988 KCNH5Q8NCM2 988 aa36.84■■■■□ 3.49
CTDNEP1-201ENST00000318988 USP54Q70EL1 1684 aa36.84■■■■□ 3.49
CTDNEP1-201ENST00000318988 FBLN1P23142 703 aa36.83■■■■□ 3.49
CTDNEP1-201ENST00000318988 ALS2Q96Q42 1657 aa36.82■■■■□ 3.49
CTDNEP1-201ENST00000318988 PPM1GO15355 546 aaPredicted RBP36.82■■■■□ 3.48
CTDNEP1-201ENST00000318988 POLKQ9UBT6 870 aa36.82■■■■□ 3.48
CTDNEP1-201ENST00000318988 PLEKHG5O94827 1062 aa36.81■■■■□ 3.48
CTDNEP1-201ENST00000318988 AHDC1Q5TGY3 1603 aaPredicted RBP36.81■■■■□ 3.48
CTDNEP1-201ENST00000318988 RRS1Q15050 365 aaKnown RBP36.8■■■■□ 3.48
CTDNEP1-201ENST00000318988 LRRC59Q96AG4 307 aaKnown RBP36.79■■■■□ 3.48
CTDNEP1-201ENST00000318988 USP19O94966 1318 aa36.77■■■■□ 3.48
CTDNEP1-201ENST00000318988 EMILIN1Q9Y6C2 1016 aa36.77■■■■□ 3.48
CTDNEP1-201ENST00000318988 FAM9BQ8IZU0 186 aa36.76■■■■□ 3.48
CTDNEP1-201ENST00000318988 GCP02774 474 aa36.75■■■■□ 3.47
CTDNEP1-201ENST00000318988 MARF1Q9Y4F3 1742 aaKnown RBP36.74■■■■□ 3.47
CTDNEP1-201ENST00000318988 PNISRQ8TF01 805 aaKnown RBP36.73■■■■□ 3.47
CTDNEP1-201ENST00000318988 SMG6Q86US8 1419 aaKnown RBP36.72■■■■□ 3.47
CTDNEP1-201ENST00000318988 WDR43Q15061 677 aaKnown RBP eCLIP36.72■■■■□ 3.47
CTDNEP1-201ENST00000318988 SLIT3O75094 1523 aa36.72■■■■□ 3.47
CTDNEP1-201ENST00000318988 MAP2P11137 1827 aaKnown RBP36.72■■■■□ 3.47
CTDNEP1-201ENST00000318988 AMPHP49418 695 aa36.7■■■■□ 3.47
CTDNEP1-201ENST00000318988 MAP3K19Q56UN5 1328 aa36.7■■■■□ 3.47
CTDNEP1-201ENST00000318988 PHLPP1O60346 1717 aa36.68■■■■□ 3.46
CTDNEP1-201ENST00000318988 HAP1P54257 671 aaPredicted RBP36.68■■■■□ 3.46
CTDNEP1-201ENST00000318988 CDK12Q9NYV4 1490 aaPredicted RBP36.68■■■■□ 3.46
CTDNEP1-201ENST00000318988 PNPLA6Q8IY17 1366 aa36.66■■■■□ 3.46
CTDNEP1-201ENST00000318988 CABLES1Q8TDN4 633 aa36.66■■■■□ 3.46
CTDNEP1-201ENST00000318988 NUDCQ9Y266 331 aa36.66■■■■□ 3.46
CTDNEP1-201ENST00000318988 MED1Q15648 1581 aaPredicted RBP36.66■■■■□ 3.46
CTDNEP1-201ENST00000318988 NFAT5O94916 1531 aa36.66■■■■□ 3.46
CTDNEP1-201ENST00000318988 ZBTB7CA1YPR0 619 aa36.65■■■■□ 3.46
CTDNEP1-201ENST00000318988 INSRP06213 1382 aa36.65■■■■□ 3.46
CTDNEP1-201ENST00000318988 KIF24Q5T7B8 1368 aa36.65■■■■□ 3.46
CTDNEP1-201ENST00000318988 DIAPH1O60610 1272 aaKnown RBP36.64■■■■□ 3.46
CTDNEP1-201ENST00000318988 FLT4P35916 1363 aa36.64■■■■□ 3.46
CTDNEP1-201ENST00000318988 ZC3H6P61129 1189 aaKnown RBP36.6■■■■□ 3.45
CTDNEP1-201ENST00000318988 ARHGEF25Q86VW2 580 aa36.6■■■■□ 3.45
CTDNEP1-201ENST00000318988 COL16A1Q07092 1604 aaPredicted RBP36.6■■■■□ 3.45
CTDNEP1-201ENST00000318988 YTHDC1Q96MU7 727 aaKnown RBP36.59■■■■□ 3.45
CTDNEP1-201ENST00000318988 RTL1A6NKG5 1358 aa36.59■■■■□ 3.45
CTDNEP1-201ENST00000318988 PHRF1Q9P1Y6 1649 aaKnown RBP36.58■■■■□ 3.45
CTDNEP1-201ENST00000318988 COL3A1P02461 1466 aaPredicted RBP36.58■■■■□ 3.45
CTDNEP1-201ENST00000318988 HOXC9P31274 260 aa36.57■■■■□ 3.44
CTDNEP1-201ENST00000318988 HSP90AB2PQ58FF8 381 aa36.57■■■■□ 3.44
CTDNEP1-201ENST00000318988 U2SURPO15042 1029 aaKnown RBP36.56■■■■□ 3.44
CTDNEP1-201ENST00000318988 IP6K1Q92551 441 aa36.56■■■■□ 3.44
CTDNEP1-201ENST00000318988 ADAMTS8Q9UP79 889 aa36.55■■■■□ 3.44
CTDNEP1-201ENST00000318988 PEAK1Q9H792 1746 aa36.55■■■■□ 3.44
CTDNEP1-201ENST00000318988 LTN1O94822 1766 aa36.53■■■■□ 3.44
CTDNEP1-201ENST00000318988 U2AF1L5P0DN76 240 aaPredicted RBP36.53■■■■□ 3.44
CTDNEP1-201ENST00000318988 U2AF1Q01081 240 aaKnown RBP eCLIP36.53■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms