RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TBC1D2BQ9UPU7 963 aa13.77□□□□□ -0.21
USP53-201ENST00000274030 FIBPO43427 364 aa13.77□□□□□ -0.21
USP53-201ENST00000274030 DDX54Q8TDD1 881 aaKnown RBP13.77□□□□□ -0.21
USP53-201ENST00000274030 NBPF8Q3BBV2 869 aa13.77□□□□□ -0.21
USP53-201ENST00000274030 CNKSR2Q8WXI2 1034 aa13.77□□□□□ -0.21
USP53-201ENST00000274030 PHF23Q9BUL5 403 aaPredicted RBP13.77□□□□□ -0.21
USP53-201ENST00000274030 TRAK2O60296 914 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 MNS1Q8NEH6 495 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 CT47A1Q5JQC4 288 aaPredicted RBP13.76□□□□□ -0.21
USP53-201ENST00000274030 STK3Q13188 491 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 OLFM4Q6UX06 510 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 CDK19Q9BWU1 502 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 BRMS1Q9HCU9 246 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 ARHGAP5Q13017 1502 aa13.76□□□□□ -0.21
USP53-201ENST00000274030 GNAI2P04899 355 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 KIF21BO75037 1637 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 OFD1O75665 1012 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 MYL6BP14649 208 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 R3HCC1Q9Y3T6 440 aaKnown RBP13.75□□□□□ -0.21
USP53-201ENST00000274030 CNNM1Q9NRU3 951 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 MPNDQ8N594 471 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 TRIM5Q9C035 493 aa13.75□□□□□ -0.21
USP53-201ENST00000274030 XBP1P17861 261 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 KIF6Q6ZMV9 814 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 AEBP2Q6ZN18 517 aaPredicted RBP13.74□□□□□ -0.21
USP53-201ENST00000274030 ZFYVE27Q5T4F4 411 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 SETQ01105 290 aaPredicted RBP13.74□□□□□ -0.21
USP53-201ENST00000274030 AKNAQ7Z591 1439 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 EPS15P42566 896 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 BRPF1P55201 1214 aaPredicted RBP13.74□□□□□ -0.21
USP53-201ENST00000274030 CUX1P39880 1505 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 SART3Q15020 963 aaKnown RBP13.74□□□□□ -0.21
USP53-201ENST00000274030 SLC26A8Q96RN1 970 aa13.74□□□□□ -0.21
USP53-201ENST00000274030 AAMPQ13685 434 aa13.73□□□□□ -0.21
USP53-201ENST00000274030 RRS1Q15050 365 aaKnown RBP13.73□□□□□ -0.21
USP53-201ENST00000274030 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.73□□□□□ -0.21
USP53-201ENST00000274030 CFTRP13569 1480 aa13.73□□□□□ -0.21
USP53-201ENST00000274030 SMC2O95347 1197 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 ATP2B2Q01814 1243 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 NAT10Q9H0A0 1025 aaKnown RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 XPCQ01831 940 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 CCDC184Q52MB2 194 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 TTC39AQ5SRH9 613 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 ZNF530Q6P9A1 599 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 PPP1R1BQ9UD71 204 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 NUTM2BA6NNL0 878 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 NUTM2EB1AL46 878 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 KINO60870 393 aaKnown RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 NUTM2AQ8IVF1 878 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 TATP17735 454 aaPredicted RBP13.72□□□□□ -0.21
USP53-201ENST00000274030 MRE11P49959 708 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 ODF2Q5BJF6 829 aa13.72□□□□□ -0.21
USP53-201ENST00000274030 TOM1L2Q6ZVM7 507 aa13.71□□□□□ -0.21
USP53-201ENST00000274030 RUFY1Q96T51 708 aa13.71□□□□□ -0.21
USP53-201ENST00000274030 CABP4P57796 275 aa13.71□□□□□ -0.21
USP53-201ENST00000274030 RRBP1Q9P2E9 1410 aaKnown RBP13.71□□□□□ -0.21
USP53-201ENST00000274030 SPC24Q8NBT2 197 aa13.7□□□□□ -0.22
USP53-201ENST00000274030 FYCO1Q9BQS8 1478 aa13.7□□□□□ -0.22
USP53-201ENST00000274030 CCDC158Q5M9N0 1113 aa13.7□□□□□ -0.22
USP53-201ENST00000274030 TEX35Q5T0J7 233 aa13.7□□□□□ -0.22
USP53-201ENST00000274030 GCC1Q96CN9 775 aa13.7□□□□□ -0.22
USP53-201ENST00000274030 CCDC85AQ96PX6 553 aaPredicted RBP13.7□□□□□ -0.22
USP53-201ENST00000274030 PDE3AQ14432 1141 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 STK38Q15208 465 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 SKIDA1Q1XH10 827 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 RABEP1Q15276 862 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 LRRCC1Q9C099 1032 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 SRCIN1Q9C0H9 1055 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 IL1RAPL2Q9NP60 686 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 RAPGEF3O95398 923 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 CAGE1Q8TC20 777 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 CASKIN1Q8WXD9 1431 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 BRPF3Q9ULD4 1205 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 SCAPERQ9BY12 1400 aa13.69□□□□□ -0.22
USP53-201ENST00000274030 FKBP4Q02790 459 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP53-201ENST00000274030 CCDC39Q9UFE4 941 aa13.68□□□□□ -0.22
USP53-201ENST00000274030 ATF7IPQ6VMQ6 1270 aa13.68□□□□□ -0.22
USP53-201ENST00000274030 PNISRQ8TF01 805 aaKnown RBP13.68□□□□□ -0.22
USP53-201ENST00000274030 SPINK5Q9NQ38 1064 aaPredicted RBP13.68□□□□□ -0.22
USP53-201ENST00000274030 MIS18AQ9NYP9 233 aa13.68□□□□□ -0.22
USP53-201ENST00000274030 ERC1Q8IUD2 1116 aa13.68□□□□□ -0.22
USP53-201ENST00000274030 PDCP20941 246 aa13.67□□□□□ -0.22
USP53-201ENST00000274030 CDK5RAP3Q96JB5 506 aa13.67□□□□□ -0.22
USP53-201ENST00000274030 TSPY26PQ9H489 355 aa13.67□□□□□ -0.22
USP53-201ENST00000274030 ARGLU1Q9NWB6 273 aaPredicted RBP13.67□□□□□ -0.22
USP53-201ENST00000274030 CYP46A1Q9Y6A2 500 aa13.67□□□□□ -0.22
USP53-201ENST00000274030 HIP1O00291 1037 aa13.67□□□□□ -0.22
USP53-201ENST00000274030 SRGAP3O43295 1099 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 HSP90AB2PQ58FF8 381 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.66□□□□□ -0.226e-7■■■■■ 125.2
USP53-201ENST00000274030 MBD3O95983 291 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 NUP133Q8WUM0 1156 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 ARAP1Q96P48 1450 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 PRG4Q92954 1404 aaPredicted RBP13.66□□□□□ -0.22
USP53-201ENST00000274030 CCT4P50991 539 aaKnown RBP13.66□□□□□ -0.22
USP53-201ENST00000274030 AACSQ86V21 672 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 THUMPD2Q9BTF0 503 aaKnown RBP13.66□□□□□ -0.22
USP53-201ENST00000274030 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
USP53-201ENST00000274030 HSP90B2PQ58FF3 399 aa13.66□□□□□ -0.22
USP53-201ENST00000274030 TMEM132AQ24JP5 1023 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 178.6 ms