RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 C1orf115Q9H7X2 142 aa20.41■□□□□ 0.86
PHRF1-201ENST00000264555 H3BQV1 296 aa20.41■□□□□ 0.86
PHRF1-201ENST00000264555 IFFO2Q5TF58 517 aa20.41■□□□□ 0.86
PHRF1-201ENST00000264555 RNF20Q5VTR2 975 aa20.41■□□□□ 0.86
PHRF1-201ENST00000264555 SHANK2Q9UPX8 1470 aa20.41■□□□□ 0.86
PHRF1-201ENST00000264555 TPM4P67936 248 aa20.4■□□□□ 0.86
PHRF1-201ENST00000264555 WAPLQ7Z5K2 1190 aa20.4■□□□□ 0.86
PHRF1-201ENST00000264555 PRAG1Q86YV5 1406 aa20.4■□□□□ 0.86
PHRF1-201ENST00000264555 NKTRP30414 1462 aaKnown RBP20.4■□□□□ 0.86
PHRF1-201ENST00000264555 FAM184AQ8NB25 1140 aa20.4■□□□□ 0.86
PHRF1-201ENST00000264555 CCDC34Q96HJ3 373 aa20.4■□□□□ 0.86
PHRF1-201ENST00000264555 KIF21AQ7Z4S6 1674 aa20.39■□□□□ 0.86
PHRF1-201ENST00000264555 GNAI2P04899 355 aa20.39■□□□□ 0.85
PHRF1-201ENST00000264555 CCT4P50991 539 aaKnown RBP20.39■□□□□ 0.85
PHRF1-201ENST00000264555 PPP6R1Q9UPN7 881 aa20.39■□□□□ 0.85
PHRF1-201ENST00000264555 NSD2O96028 1365 aa20.38■□□□□ 0.85
PHRF1-201ENST00000264555 ABCC11Q96J66 1382 aa20.38■□□□□ 0.85
PHRF1-201ENST00000264555 AIMP1Q12904 312 aaKnown RBP20.38■□□□□ 0.85
PHRF1-201ENST00000264555 PROSER2Q86WR7 435 aaPredicted RBP20.38■□□□□ 0.85
PHRF1-201ENST00000264555 TOMM22Q9NS69 142 aa20.38■□□□□ 0.85
PHRF1-201ENST00000264555 ISY1Q9ULR0 285 aaKnown RBP20.37■□□□□ 0.85
PHRF1-201ENST00000264555 RARSP54136 660 aaKnown RBP20.37■□□□□ 0.85
PHRF1-201ENST00000264555 FBXO31Q5XUX0 539 aaPredicted RBP20.37■□□□□ 0.85
PHRF1-201ENST00000264555 FRAT2O75474 233 aaPredicted RBP20.36■□□□□ 0.85
PHRF1-201ENST00000264555 ANKLE2Q86XL3 938 aa20.36■□□□□ 0.85
PHRF1-201ENST00000264555 DISP1Q96F81 1524 aa20.36■□□□□ 0.85
PHRF1-201ENST00000264555 ABCA5Q8WWZ7 1642 aa20.36■□□□□ 0.85
PHRF1-201ENST00000264555 SURF6O75683 361 aaKnown RBP20.36■□□□□ 0.85
PHRF1-201ENST00000264555 SF3A1Q15459 793 aaKnown RBP20.36■□□□□ 0.85
PHRF1-201ENST00000264555 FOXD4L6Q3SYB3 417 aaPredicted RBP20.36■□□□□ 0.85
PHRF1-201ENST00000264555 DUSP27Q5VZP5 1158 aa20.36■□□□□ 0.85
PHRF1-201ENST00000264555 FOXD4L3Q6VB84 417 aaPredicted RBP20.36■□□□□ 0.85
PHRF1-201ENST00000264555 HDGFL1Q5TGJ6 251 aa20.35■□□□□ 0.85
PHRF1-201ENST00000264555 TMX4Q9H1E5 349 aaPredicted RBP20.35■□□□□ 0.85
PHRF1-201ENST00000264555 EIF4G3O43432 1585 aaKnown RBP20.35■□□□□ 0.85
PHRF1-201ENST00000264555 C20orf194Q5TEA3 1177 aa20.34■□□□□ 0.85
PHRF1-201ENST00000264555 CLASRPQ8N2M8 674 aaKnown RBP20.34■□□□□ 0.85
PHRF1-201ENST00000264555 DNMT1P26358 1616 aaKnown RBP20.34■□□□□ 0.85
PHRF1-201ENST00000264555 CHD1LQ86WJ1 897 aa20.34■□□□□ 0.85
PHRF1-201ENST00000264555 CNTROBQ8N137 903 aa20.33■□□□□ 0.85
PHRF1-201ENST00000264555 ASXL2Q76L83 1435 aa20.33■□□□□ 0.84
PHRF1-201ENST00000264555 TULP1O00294 542 aaPredicted RBP20.33■□□□□ 0.84
PHRF1-201ENST00000264555 SAMD9Q5K651 1589 aa20.32■□□□□ 0.84
PHRF1-201ENST00000264555 TRAPPC8Q9Y2L5 1435 aa20.32■□□□□ 0.84
PHRF1-201ENST00000264555 WASLO00401 505 aaPredicted RBP20.32■□□□□ 0.84
PHRF1-201ENST00000264555 ALDH1L2Q3SY69 923 aa20.32■□□□□ 0.84
PHRF1-201ENST00000264555 ARHGEF12Q9NZN5 1544 aa20.32■□□□□ 0.84
PHRF1-201ENST00000264555 TMEM57Q8N5G2 664 aa20.31■□□□□ 0.84
PHRF1-201ENST00000264555 IFT57Q9NWB7 429 aa20.31■□□□□ 0.84
PHRF1-201ENST00000264555 RABEP1Q15276 862 aa20.31■□□□□ 0.84
PHRF1-201ENST00000264555 SMC3Q9UQE7 1217 aa20.31■□□□□ 0.84
PHRF1-201ENST00000264555 LRPPRCP42704 1394 aaKnown RBP20.31■□□□□ 0.84
PHRF1-201ENST00000264555 WDR7Q9Y4E6 1490 aa20.31■□□□□ 0.84
PHRF1-201ENST00000264555 PZPP20742 1482 aa20.3■□□□□ 0.84
PHRF1-201ENST00000264555 PARD3Q8TEW0 1356 aa20.3■□□□□ 0.84
PHRF1-201ENST00000264555 ZNF530Q6P9A1 599 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-201ENST00000264555 SSH1Q8WYL5 1049 aa20.29■□□□□ 0.84
PHRF1-201ENST00000264555 A2MP01023 1474 aa20.29■□□□□ 0.84
PHRF1-201ENST00000264555 AMER1Q5JTC6 1135 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-201ENST00000264555 NME9Q86XW9 330 aa20.29■□□□□ 0.84
PHRF1-201ENST00000264555 CPLX2Q6PUV4 134 aaKnown RBP20.29■□□□□ 0.84
PHRF1-201ENST00000264555 PBRM1Q86U86 1689 aa20.29■□□□□ 0.84
PHRF1-201ENST00000264555 SYTL4Q96C24 671 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-201ENST00000264555 TATP17735 454 aaPredicted RBP20.28■□□□□ 0.84
PHRF1-201ENST00000264555 ERC1Q8IUD2 1116 aa20.28■□□□□ 0.84
PHRF1-201ENST00000264555 RPAP2Q8IXW5 612 aaPredicted RBP20.28■□□□□ 0.84
PHRF1-201ENST00000264555 SRCIN1Q9C0H9 1055 aa20.28■□□□□ 0.84
PHRF1-201ENST00000264555 ZNF518AQ6AHZ1 1483 aa20.28■□□□□ 0.84
PHRF1-201ENST00000264555 MCTP1Q6DN14 999 aa20.28■□□□□ 0.84
PHRF1-201ENST00000264555 LRRCC1Q9C099 1032 aa20.28■□□□□ 0.84
PHRF1-201ENST00000264555 MCM2P49736 904 aa20.27■□□□□ 0.84
PHRF1-201ENST00000264555 ADGRL2O95490 1459 aa20.27■□□□□ 0.84
PHRF1-201ENST00000264555 SYNE3Q6ZMZ3 975 aa20.27■□□□□ 0.84
PHRF1-201ENST00000264555 EIF2AK4Q9P2K8 1649 aaKnown RBP20.27■□□□□ 0.84
PHRF1-201ENST00000264555 ASXL1Q8IXJ9 1541 aa20.27■□□□□ 0.84
PHRF1-201ENST00000264555 TESK2Q96S53 571 aa20.26■□□□□ 0.83
PHRF1-201ENST00000264555 THUMPD2Q9BTF0 503 aaKnown RBP20.26■□□□□ 0.83
PHRF1-201ENST00000264555 NEUROD6Q96NK8 337 aa20.26■□□□□ 0.83
PHRF1-201ENST00000264555 EMILIN1Q9Y6C2 1016 aa20.25■□□□□ 0.83
PHRF1-201ENST00000264555 ANKRD36BQ8N2N9 1353 aa20.25■□□□□ 0.83
PHRF1-201ENST00000264555 GNAT3A8MTJ3 354 aa20.24■□□□□ 0.83
PHRF1-201ENST00000264555 NEK4P51957 841 aa20.24■□□□□ 0.83
PHRF1-201ENST00000264555 PSMA5P28066 241 aa20.24■□□□□ 0.83
PHRF1-201ENST00000264555 TRDNQ13061 729 aa20.24■□□□□ 0.83
PHRF1-201ENST00000264555 VPS37CA5D8V6 355 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-201ENST00000264555 HIP1O00291 1037 aa20.23■□□□□ 0.83
PHRF1-201ENST00000264555 APPP05067 770 aa20.23■□□□□ 0.83
PHRF1-201ENST00000264555 FSD1Q9BTV5 496 aa20.23■□□□□ 0.83
PHRF1-201ENST00000264555 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.23■□□□□ 0.83
PHRF1-201ENST00000264555 CPLX1O14810 134 aa20.23■□□□□ 0.83
PHRF1-201ENST00000264555 AKAP17AQ02040 695 aaKnown RBP20.22■□□□□ 0.83
PHRF1-201ENST00000264555 KCNH5Q8NCM2 988 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 UHRF1BP1Q6BDS2 1440 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 TRAK2O60296 914 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 SPG7Q9UQ90 795 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 GOLGA6L19H0YKK7 550 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 MCM10Q7L590 875 aa20.22■□□□□ 0.83
PHRF1-201ENST00000264555 RASSF8Q8NHQ8 419 aa20.21■□□□□ 0.83
PHRF1-201ENST00000264555 G3V3G9 751 aa20.21■□□□□ 0.83
PHRF1-201ENST00000264555 DCAF8Q5TAQ9 597 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms