RNA–Protein interactions for RNA: ENST00000258781.10

CCM2-201, Transcript of CCM2 scaffold protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCM2, Length 1,894 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-201ENST00000258781 RNF123Q5XPI4 1314 aa36.7■■■■□ 3.46
CCM2-201ENST00000258781 XIRP1Q702N8 1843 aaKnown RBP36.69■■■■□ 3.46
CCM2-201ENST00000258781 ZNF335Q9H4Z2 1342 aaPredicted RBP36.69■■■■□ 3.46
CCM2-201ENST00000258781 FYB1O15117 783 aa36.68■■■■□ 3.46
CCM2-201ENST00000258781 CFAP53Q96M91 514 aa36.68■■■■□ 3.46
CCM2-201ENST00000258781 MTHFSP49914 203 aa36.67■■■■□ 3.46
CCM2-201ENST00000258781 PLEKHG3A1L390 1219 aa36.66■■■■□ 3.46
CCM2-201ENST00000258781 PELP1Q8IZL8 1130 aaKnown RBP36.64■■■■□ 3.46
CCM2-201ENST00000258781 GGNBP2Q9H3C7 697 aa36.64■■■■□ 3.46
CCM2-201ENST00000258781 ACEP12821 1306 aa36.64■■■■□ 3.46
CCM2-201ENST00000258781 EDC4Q6P2E9 1401 aaKnown RBP36.63■■■■□ 3.45
CCM2-201ENST00000258781 NRKQ7Z2Y5 1582 aa36.63■■■■□ 3.45
CCM2-201ENST00000258781 NGEFQ8N5V2 710 aa36.62■■■■□ 3.45
CCM2-201ENST00000258781 IRX6P78412 446 aaPredicted RBP36.61■■■■□ 3.45
CCM2-201ENST00000258781 PMFBP1Q8TBY8 1022 aa36.61■■■■□ 3.45
CCM2-201ENST00000258781 NCOA3Q9Y6Q9 1424 aa36.6■■■■□ 3.45
CCM2-201ENST00000258781 DMRT2Q9Y5R5 561 aa36.6■■■■□ 3.45
CCM2-201ENST00000258781 ZNF521Q96K83 1311 aa36.6■■■■□ 3.45
CCM2-201ENST00000258781 C19orf44Q9H6X5 657 aa36.59■■■■□ 3.45
CCM2-201ENST00000258781 LRRC7Q96NW7 1537 aa36.59■■■■□ 3.45
CCM2-201ENST00000258781 SUGP2Q8IX01 1082 aaKnown RBP eCLIP36.57■■■■□ 3.44
CCM2-201ENST00000258781 CCDC146Q8IYE0 955 aa36.57■■■■□ 3.44
CCM2-201ENST00000258781 CDCA7LQ96GN5 454 aa36.57■■■■□ 3.44
CCM2-201ENST00000258781 ZNF692Q9BU19 519 aaPredicted RBP36.56■■■■□ 3.44
CCM2-201ENST00000258781 USP6P35125 1406 aa36.55■■■■□ 3.44
CCM2-201ENST00000258781 COL3A1P02461 1466 aaPredicted RBP36.53■■■■□ 3.44
CCM2-201ENST00000258781 DCCP43146 1447 aa36.52■■■■□ 3.44
CCM2-201ENST00000258781 APAF1O14727 1248 aa36.52■■■■□ 3.44
CCM2-201ENST00000258781 NGDNQ8NEJ9 315 aaKnown RBP36.5■■■■□ 3.43
CCM2-201ENST00000258781 RCAN3Q9UKA8 241 aa36.5■■■■□ 3.43
CCM2-201ENST00000258781 SSH2Q76I76 1423 aa36.49■■■■□ 3.43
CCM2-201ENST00000258781 NME9Q86XW9 330 aa36.48■■■■□ 3.43
CCM2-201ENST00000258781 PPP4R2Q9NY27 417 aa36.48■■■■□ 3.43
CCM2-201ENST00000258781 PHF8Q9UPP1 1060 aa36.48■■■■□ 3.43
CCM2-201ENST00000258781 IQSEC2Q5JU85 1478 aa36.47■■■■□ 3.43
CCM2-201ENST00000258781 C1orf167Q5SNV9 1468 aa36.47■■■■□ 3.43
CCM2-201ENST00000258781 MST1RQ04912 1400 aa36.47■■■■□ 3.43
CCM2-201ENST00000258781 GOLGA2Q08379 1002 aa36.47■■■■□ 3.43
CCM2-201ENST00000258781 ESCO1Q5FWF5 840 aa36.46■■■■□ 3.43
CCM2-201ENST00000258781 RUNDC1Q96C34 613 aa36.46■■■■□ 3.43
CCM2-201ENST00000258781 TTC21BQ7Z4L5 1316 aa36.45■■■■□ 3.43
CCM2-201ENST00000258781 MSH6P52701 1360 aa36.45■■■■□ 3.43
CCM2-201ENST00000258781 ORAI2Q96SN7 254 aa36.45■■■■□ 3.43
CCM2-201ENST00000258781 ATF3P18847 181 aa36.44■■■■□ 3.42
CCM2-201ENST00000258781 PNPLA6Q8IY17 1366 aa36.44■■■■□ 3.42
CCM2-201ENST00000258781 ZRANB1Q9UGI0 708 aa36.43■■■■□ 3.42
CCM2-201ENST00000258781 MAP2P11137 1827 aaKnown RBP36.42■■■■□ 3.42
CCM2-201ENST00000258781 RRP1P56182 461 aaKnown RBP36.39■■■■□ 3.42
CCM2-201ENST00000258781 DUSP27Q5VZP5 1158 aa36.39■■■■□ 3.42
CCM2-201ENST00000258781 CADPS2Q86UW7 1296 aa36.39■■■■□ 3.42
CCM2-201ENST00000258781 SLFN5Q08AF3 891 aa36.38■■■■□ 3.41
CCM2-201ENST00000258781 NCBP3Q53F19 620 aaKnown RBP36.38■■■■□ 3.41
CCM2-201ENST00000258781 PIK3C2AO00443 1686 aa36.38■■■■□ 3.41
CCM2-201ENST00000258781 KIF1AQ12756 1690 aa36.38■■■■□ 3.41
CCM2-201ENST00000258781 AATKQ6ZMQ8 1374 aa36.37■■■■□ 3.41
CCM2-201ENST00000258781 TRMT2AQ8IZ69 625 aaKnown RBP36.37■■■■□ 3.41
CCM2-201ENST00000258781 U2AF1L5P0DN76 240 aaPredicted RBP36.35■■■■□ 3.41
CCM2-201ENST00000258781 U2AF1Q01081 240 aaKnown RBP eCLIP36.35■■■■□ 3.41
CCM2-201ENST00000258781 TTC21AQ8NDW8 1320 aa36.34■■■■□ 3.41
CCM2-201ENST00000258781 OVOS2A0A0J9YW53 1432 aa36.33■■■■□ 3.41
CCM2-201ENST00000258781 OVOS2Q6IE36 1432 aa36.33■■■■□ 3.41
CCM2-201ENST00000258781 LTBP4Q8N2S1 1624 aa36.33■■■■□ 3.41
CCM2-201ENST00000258781 TCP11L2Q8N4U5 519 aa36.32■■■■□ 3.4
CCM2-201ENST00000258781 COG3Q96JB2 828 aa36.32■■■■□ 3.4
CCM2-201ENST00000258781 POLKQ9UBT6 870 aa36.32■■■■□ 3.4
CCM2-201ENST00000258781 E9PSI1 815 aa36.31■■■■□ 3.4
CCM2-201ENST00000258781 DIAPH1O60610 1272 aaKnown RBP36.31■■■■□ 3.4
CCM2-201ENST00000258781 CDK12Q9NYV4 1490 aaPredicted RBP36.3■■■■□ 3.4
CCM2-201ENST00000258781 FOXO3O43524 673 aa36.3■■■■□ 3.4
CCM2-201ENST00000258781 FBLN1P23142 703 aa36.3■■■■□ 3.4
CCM2-201ENST00000258781 PHF23Q9BUL5 403 aaPredicted RBP36.3■■■■□ 3.4
CCM2-201ENST00000258781 MARF1Q9Y4F3 1742 aaKnown RBP36.29■■■■□ 3.4
CCM2-201ENST00000258781 WWC1Q8IX03 1113 aa36.29■■■■□ 3.4
CCM2-201ENST00000258781 CCDC27Q2M243 656 aa36.28■■■■□ 3.4
CCM2-201ENST00000258781 PSME1Q06323 249 aa36.26■■■■□ 3.39
CCM2-201ENST00000258781 TRPM3Q9HCF6 1732 aaPredicted RBP36.25■■■■□ 3.39
CCM2-201ENST00000258781 U2SURPO15042 1029 aaKnown RBP36.25■■■■□ 3.39
CCM2-201ENST00000258781 AEBP2Q6ZN18 517 aaPredicted RBP36.25■■■■□ 3.39
CCM2-201ENST00000258781 USP54Q70EL1 1684 aa36.24■■■■□ 3.39
CCM2-201ENST00000258781 XPCQ01831 940 aaPredicted RBP36.24■■■■□ 3.39
CCM2-201ENST00000258781 PAK3O75914 559 aaPredicted RBP36.23■■■■□ 3.39
CCM2-201ENST00000258781 USP31Q70CQ4 1352 aa36.22■■■■□ 3.39
CCM2-201ENST00000258781 PLEKHF1Q96S99 279 aa36.22■■■■□ 3.39
CCM2-201ENST00000258781 PNNQ9H307 717 aaKnown RBP36.22■■■■□ 3.39
CCM2-201ENST00000258781 SPINK5Q9NQ38 1064 aaPredicted RBP36.22■■■■□ 3.39
CCM2-201ENST00000258781 WDR63Q8IWG1 891 aa36.21■■■■□ 3.39
CCM2-201ENST00000258781 ABTB2Q8N961 1025 aa36.18■■■■□ 3.38
CCM2-201ENST00000258781 DDX17Q92841 729 aaKnown RBP36.18■■■■□ 3.38
CCM2-201ENST00000258781 RRP7AQ9Y3A4 280 aaKnown RBP36.18■■■■□ 3.38
CCM2-201ENST00000258781 NUTM2GQ5VZR2 741 aa36.18■■■■□ 3.38
CCM2-201ENST00000258781 EMILIN1Q9Y6C2 1016 aa36.18■■■■□ 3.38
CCM2-201ENST00000258781 SLAIN2Q9P270 581 aa36.17■■■■□ 3.38
CCM2-201ENST00000258781 BRINP3Q76B58 766 aa36.16■■■■□ 3.38
CCM2-201ENST00000258781 PPM1GO15355 546 aaPredicted RBP36.16■■■■□ 3.38
CCM2-201ENST00000258781 NLRP6P59044 892 aa36.16■■■■□ 3.38
CCM2-201ENST00000258781 NEUROD2Q15784 382 aa36.16■■■■□ 3.38
CCM2-201ENST00000258781 MAPK8IP3Q9UPT6 1336 aa36.15■■■■□ 3.38
CCM2-201ENST00000258781 KRT28Q7Z3Y7 464 aa36.15■■■■□ 3.38
CCM2-201ENST00000258781 RRS1Q15050 365 aaKnown RBP36.14■■■■□ 3.38
CCM2-201ENST00000258781 FCHSD2O94868 740 aa36.14■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms