RNA–Protein interactions for RNA: ENST00000258781.10

CCM2-201, Transcript of CCM2 scaffold protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCM2, Length 1,894 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-201ENST00000258781 DDX3XO00571 662 aaKnown RBP eCLIP29.91■■■□□ 2.381e-10■■■□□ 15
CCM2-201ENST00000258781 FMR1Q06787 632 aaKnown RBP eCLIP31.17■■■□□ 2.588e-10■■■■■ 77.9
CCM2-201ENST00000258781 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.43■■■■■ 4.224e-9■■■□□ 16.7
CCM2-201ENST00000258781 PTBP1P26599 531 aaKnown RBP eCLIP24.69■■□□□ 1.549e-9■■■■■ 35.7
CCM2-201ENST00000258781 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP28.61■■■□□ 2.171e-8■■□□□ 13.3
CCM2-201ENST00000258781 GTF2F1P35269 517 aaKnown RBP eCLIP30.49■■■□□ 2.471e-8■■■■■ 31.2
CCM2-201ENST00000258781 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP24.62■■□□□ 1.531e-8■■■■□ 21.4
CCM2-201ENST00000258781 CSTF2P33240 577 aaKnown RBP eCLIP25.42■■□□□ 1.663e-8■■■■■ 39.8
CCM2-201ENST00000258781 SAFB2Q14151 953 aaKnown RBP eCLIP37.44■■■■□ 3.585e-8■■■□□ 18
CCM2-201ENST00000258781 HNRNPLP14866 589 aaKnown RBP eCLIP27.43■■□□□ 1.981e-7■□□□□ 10.3
CCM2-201ENST00000258781 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP21.97■■□□□ 1.112e-7■■■□□ 15.8
CCM2-201ENST00000258781 SF3B1O75533 1304 aaKnown RBP eCLIP28.65■■■□□ 2.182e-7■■■■■ 82.1
CCM2-201ENST00000258781 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.96■■■■■ 4.154e-7■■■□□ 18.4
CCM2-201ENST00000258781 AQRO60306 1485 aaKnown RBP eCLIP43.84■■■■■ 4.617e-7■■■■■ 33.7
CCM2-201ENST00000258781 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP28.88■■■□□ 2.219e-7■■■■□ 19.3
CCM2-201ENST00000258781 NIPBLQ6KC79 2804 aaeCLIP20.93■□□□□ 0.941e-6■■■■■ 35.4
CCM2-201ENST00000258781 PRPF4O43172 522 aaKnown RBP eCLIP28.35■■■□□ 2.131e-6■■□□□ 13.8
CCM2-201ENST00000258781 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP23.92■■□□□ 1.421e-6■■■■□ 24.6
CCM2-201ENST00000258781 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.78■■■□□ 2.361e-6■■■■■ 98.5
CCM2-201ENST00000258781 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP29.33■■■□□ 2.291e-6■■■■■ 58.1
CCM2-201ENST00000258781 TBRG4Q969Z0 631 aaKnown RBP eCLIP27.53■■■□□ 22e-6■■■■■ 54.9
CCM2-201ENST00000258781 YBX3P16989 372 aaKnown RBP eCLIP31.95■■■□□ 2.712e-6■■□□□ 12.1
CCM2-201ENST00000258781 HNRNPMP52272 730 aaKnown RBP eCLIP40.43■■■■■ 4.062e-6■■■□□ 15.7
CCM2-201ENST00000258781 RBFOX2O43251 390 aaKnown RBP eCLIP22.79■■□□□ 1.245e-6■■■■■ 29.4
CCM2-201ENST00000258781 SLTMQ9NWH9 1034 aaKnown RBP eCLIP29.33■■■□□ 2.297e-6■□□□□ 10.1
CCM2-201ENST00000258781 PCBP2Q15366 365 aaKnown RBP eCLIP27.24■■□□□ 1.958e-6■■■■□ 24
CCM2-201ENST00000258781 LARP4Q71RC2 724 aaKnown RBP eCLIP27.23■■□□□ 1.959e-6■■■■■ 29.6
Retrieved 27 of 27 RNA–protein pairs in 238.1 ms