RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 DMRT2Q9Y5R5 561 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 GPRASP1Q5JY77 1395 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 ESPNB1AK53 854 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 EID1Q9Y6B2 187 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 VPS37CA5D8V6 355 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-201ENST00000249837 WAPLQ7Z5K2 1190 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 ASXL1Q8IXJ9 1541 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 TBC1D32Q96NH3 1257 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 GOLGA6L6A8MZA4 724 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 CIZ1Q9ULV3 898 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-201ENST00000249837 ERC2O15083 957 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 CSPP1Q1MSJ5 1256 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 MAP4K4O95819 1239 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 GCC1Q96CN9 775 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 C9orf78Q9NZ63 289 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 GORABQ5T7V8 394 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SPATA31E1Q6ZUB1 1445 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SAMD9Q5K651 1589 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 PBRM1Q86U86 1689 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 RBM42Q9BTD8 480 aaKnown RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 TEFQ10587 303 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 TXNDC2Q86VQ3 553 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 GNL2Q13823 731 aaKnown RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 TRIM27P14373 513 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 TNPO1Q92973 898 aaKnown RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 FAM135AQ9P2D6 1515 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SCAF11Q99590 1463 aaKnown RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 BCORL1Q5H9F3 1711 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SURF6O75683 361 aaKnown RBP5.61□□□□□ -1.51
VPS13C-201ENST00000249837 GNAI2P04899 355 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 NRDCO43847 1150 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SLC4A2P04920 1241 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 PANK2Q9BZ23 570 aa5.61□□□□□ -1.51
VPS13C-201ENST00000249837 SETD1BQ9UPS6 1966 aaKnown RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 FIBPO43427 364 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 ADGBQ8N7X0 1667 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 IFIT2P09913 472 aaKnown RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 SF3A1Q15459 793 aaKnown RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 TSPY26PQ9H489 355 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 RBM27Q9P2N5 1060 aaKnown RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 ZNF592Q92610 1267 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 KIAA0556O60303 1618 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 H3BQV1 296 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 IFFO2Q5TF58 517 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 CT47B1P0C2W7 299 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 SYCP2Q9BX26 1530 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 TPM2P07951 284 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 UBTFL1P0CB47 393 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-201ENST00000249837 CCDC173Q0VFZ6 552 aa5.6□□□□□ -1.51
VPS13C-201ENST00000249837 G3BP1Q13283 466 aaKnown RBP eCLIP5.6□□□□□ -1.514e-6■■■□□ 18.1
VPS13C-201ENST00000249837 MCM10Q7L590 875 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 ZMYM4Q5VZL5 1548 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 MBD3O95983 291 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 FAM69CQ0P6D2 419 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 NOS1P29475 1434 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 DDX54Q8TDD1 881 aaKnown RBP5.59□□□□□ -1.51
VPS13C-201ENST00000249837 EXOC6BQ9Y2D4 811 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 AIMP1Q12904 312 aaKnown RBP5.59□□□□□ -1.51
VPS13C-201ENST00000249837 ATP6V1DQ9Y5K8 247 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 NLRP6P59044 892 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 TBC1D9Q6ZT07 1266 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 ADAMTS12P58397 1594 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 NME9Q86XW9 330 aa5.59□□□□□ -1.51
VPS13C-201ENST00000249837 BAG4O95429 457 aaKnown RBP5.59□□□□□ -1.52
VPS13C-201ENST00000249837 TAF7LQ5H9L4 462 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 RUFY2Q8WXA3 655 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 UPF3BQ9BZI7 483 aaKnown RBP5.59□□□□□ -1.52
VPS13C-201ENST00000249837 ARHGEF12Q9NZN5 1544 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 KDM2BQ8NHM5 1336 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 HTATSF1O43719 755 aaKnown RBP5.59□□□□□ -1.52
VPS13C-201ENST00000249837 GNAI3P08754 354 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 CCDC39Q9UFE4 941 aa5.59□□□□□ -1.52
VPS13C-201ENST00000249837 BLMP54132 1417 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 XRCC6P12956 609 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 FAM184AQ8NB25 1140 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 SPC24Q8NBT2 197 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 RPGRIP1LQ68CZ1 1315 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 F6X3S4 739 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 ZKSCAN1P17029 563 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 TSHZ3Q63HK5 1081 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 TULP1O00294 542 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 IL1RAPL2Q9NP60 686 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 HDAC5Q9UQL6 1122 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 IDI1Q13907 227 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 C1orf141Q5JVX7 400 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 UHRF1BP1Q6BDS2 1440 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 RRAGDQ9NQL2 400 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 COL17A1Q9UMD9 1497 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 CHMP4AQ9BY43 222 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 OSCARQ8IYS5 282 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 ZRANB1Q9UGI0 708 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 SYCE3A1L190 88 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 FCHSD2O94868 740 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 HDAC1Q13547 482 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 EMILIN1Q9Y6C2 1016 aa5.58□□□□□ -1.52
VPS13C-201ENST00000249837 NUDT16Q96DE0 195 aaKnown RBP5.58□□□□□ -1.52
VPS13C-201ENST00000249837 A2MP01023 1474 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 ABCC11Q96J66 1382 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 DISP1Q96F81 1524 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 PSME1Q06323 249 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms