RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Camta1A2A891 1682 aa28.29■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Farp2Q91VS8 1065 aa28.29■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Znf335A2A5K6 1337 aa28.24■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 Kif16bB1AVY7 1312 aa28.24■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 Mak16Q8BGS0 296 aaKnown RBP28.24■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 GnpatP98192 678 aa28.23■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 Gimap5Q8BWF2 308 aa28.23■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 DccP70211 1447 aa28.21■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 Ttll13A4Q9F6 804 aa28.21■■■□□ 2.11
Ccdc88a-202ENSMUST00000109477 Chd4Q6PDQ2 1915 aaKnown RBP28.19■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Ddx17Q501J6 650 aaKnown RBP28.18■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Wdr17E9Q271 1322 aa28.17■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Kiaa1107Q80TK0 1369 aa28.16■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Esx1O88933 382 aa28.16■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Ofd1Q80Z25 1017 aa28.16■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Astn2Q80Z10 1352 aa28.16■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 P2rx7Q9Z1M0 595 aa28.15■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Tom1O88746 492 aa28.15■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Slc35g1Q8BY79 368 aa28.15■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 GsdmaQ9EST1 446 aa28.14■■■□□ 2.1
Ccdc88a-202ENSMUST00000109477 Kif24Q6NWW5 1356 aa28.13■■■□□ 2.09
Ccdc88a-202ENSMUST00000109477 Pik3c2aQ61194 1686 aa28.12■■■□□ 2.09
Ccdc88a-202ENSMUST00000109477 Tnnt3Q9QZ47 272 aa28.12■■■□□ 2.09
Ccdc88a-202ENSMUST00000109477 Hoxb7P09024 217 aa28.09■■■□□ 2.09
Ccdc88a-202ENSMUST00000109477 Col16a1Q8BLX7 1580 aa28.07■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Fyb1O35601 819 aa28.07■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Mdc1Q5PSV9 1707 aa28.07■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Birc3O08863 600 aa28.06■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Frmpd2A0A140LI67 1392 aa28.05■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Fbxo41Q6NS60 873 aa28.05■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Golga2Q921M4 999 aa28.04■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 CemipQ8BI06 1361 aa28.04■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Trim28Q62318 834 aa28.04■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Cdk12Q14AX6 1484 aaKnown RBP28.03■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Tsen2Q6P7W5 460 aa28.03■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Ubr1O70481 1757 aa28.03■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Usp19Q3UJD6 1360 aa28.03■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 TimelessQ9R1X4 1197 aa28.02■■■□□ 2.08
Ccdc88a-202ENSMUST00000109477 Map4k4P97820 1233 aaKnown RBP28.01■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Zfp444Q3TDV8 331 aaKnown RBP28.01■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Scn7aB1AYL1 1681 aa28■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Qtrt2B8ZXI1 415 aa27.98■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 U2af1Q9D883 239 aaKnown RBP27.98■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Map2P20357 1828 aa27.98■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Ppp1r15aP17564 657 aa27.97■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Rad21Q61550 635 aaKnown RBP27.97■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 CrbnQ8C7D2 445 aa27.96■■■□□ 2.07
Ccdc88a-202ENSMUST00000109477 Eif5bQ05D44 1216 aaKnown RBP27.95■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Dixdc1Q80Y83 711 aa27.95■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Ybx3Q9JKB3 361 aaKnown RBP27.95■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Atp7bQ64446 1462 aa27.95■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Dennd6aQ8BH65 605 aa27.94■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Gimap6Q8K349 305 aa27.93■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Uspl1Q3ULM6 1089 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Ecm2Q5FW85 670 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Ncoa4Q5U4H9 625 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Zfp142G5E869 1843 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Atp10bB1AWN4 1474 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Znf526Q8BI66 675 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Slc12a5Q91V14 1138 aa27.92■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Fam135bQ9DAI6 1403 aa27.91■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Nlgn1Q99K10 843 aa27.91■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Uhrf1bp1lA2RSJ4 1457 aa27.91■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Cadps2Q8BYR5 1297 aa27.9■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Slc5a4bQ91ZP4 660 aa27.89■■■□□ 2.06
Ccdc88a-202ENSMUST00000109477 Gm21190A0A0G2JGJ6 266 aa27.89■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Scaf1Q5U4C3 1256 aaKnown RBP27.89■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Ncapd2Q8K2Z4 1392 aa27.88■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Marf1Q8BJ34 1730 aaKnown RBP27.87■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Dzip1Q8BMD2 852 aa27.87■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Speer4f1Q9D5Q6 258 aa27.87■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Abca15E9PWH4 1668 aa27.86■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Bcl2l12Q9D3J3 255 aa27.86■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Spef2Q8C9J3 1734 aa27.85■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 FancaQ9JL70 1439 aa27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Znf541Q0GGX2 1363 aa27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 PaskQ8CEE6 1383 aa27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Nckap5lQ6GQX2 1323 aa27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Tcerg1Q8CGF7 1100 aaKnown RBP27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Cabp4Q8VHC5 271 aa27.84■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Zmym3Q9JLM4 1370 aa27.83■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Fchsd2Q3USJ8 740 aa27.83■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Ralbp1Q62172 648 aa27.83■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Rsph6aQ8CDR2 708 aa27.83■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 PalmQ9Z0P4 383 aa27.83■■■□□ 2.05
Ccdc88a-202ENSMUST00000109477 Mapk8ip3Q9ESN9 1337 aa27.82■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Smim5Q8BT42 78 aa27.81■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Apaf1O88879 1249 aa27.81■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Ncbp3Q8BZR9 615 aaKnown RBP27.8■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Tet3Q8BG87 1668 aa27.79■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Kank1E9Q238 1360 aa27.79■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 PtprvP70289 1705 aa27.79■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Rad17Q6NXW6 688 aa27.78■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Ano8Q6PB70 1060 aa27.78■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Acsbg1Q99PU5 721 aa27.78■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Bcl9lQ67FY2 1494 aa27.78■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 L3mbtl2P59178 703 aa27.77■■■□□ 2.04
Ccdc88a-202ENSMUST00000109477 Upf2A2AT37 1269 aaKnown RBP27.76■■■□□ 2.03
Ccdc88a-202ENSMUST00000109477 Neurod2Q62414 383 aa27.76■■■□□ 2.03
Ccdc88a-202ENSMUST00000109477 Ciz1Q8VEH2 845 aa27.76■■■□□ 2.03
Retrieved 100 of 22,080 RNA–protein pairs in 14.8 ms