RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Abcc10Q8R4P9 1501 aa11.5□□□□□ -0.57
Trim39-201ENSMUST00000042717 Atf3Q60765 181 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 D430041D05RikF6ZGR6 1678 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 C3P01027 1663 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Phlpp1Q8CHE4 1687 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Atf7ipQ7TT18 1306 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Ddx17Q501J6 650 aaKnown RBP11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Lmtk3Q5XJV6 1424 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Dennd6aQ8BH65 605 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Slc12a5Q91V14 1138 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Frmpd2A0A140LI67 1392 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 Fyb1O35601 819 aa11.49□□□□□ -0.57
Trim39-201ENSMUST00000042717 KdrP35918 1367 aa11.48□□□□□ -0.57
Trim39-201ENSMUST00000042717 Nckap5lQ6GQX2 1323 aa11.48□□□□□ -0.57
Trim39-201ENSMUST00000042717 1700123L14RikQ3V2K7 440 aa11.48□□□□□ -0.57
Trim39-201ENSMUST00000042717 Amer1Q7TS75 1132 aa11.48□□□□□ -0.57
Trim39-201ENSMUST00000042717 Csrnp3P59055 597 aa11.47□□□□□ -0.57
Trim39-201ENSMUST00000042717 PalmQ9Z0P4 383 aa11.47□□□□□ -0.57
Trim39-201ENSMUST00000042717 NalcnQ8BXR5 1738 aa11.47□□□□□ -0.57
Trim39-201ENSMUST00000042717 Thsd7aQ69ZU6 1645 aa11.47□□□□□ -0.57
Trim39-201ENSMUST00000042717 Col14a1Q80X19 1797 aa11.47□□□□□ -0.57
Trim39-201ENSMUST00000042717 C5P06684 1680 aa11.46□□□□□ -0.57
Trim39-201ENSMUST00000042717 Iqsec2Q5DU25 1478 aa11.46□□□□□ -0.58
Trim39-201ENSMUST00000042717 Mapk8ip3Q9ESN9 1337 aa11.45□□□□□ -0.58
Trim39-201ENSMUST00000042717 Amigo3Q8C2S7 508 aa11.45□□□□□ -0.58
Trim39-201ENSMUST00000042717 Farp2Q91VS8 1065 aa11.45□□□□□ -0.58
Trim39-201ENSMUST00000042717 N4bp2F8VQG7 1678 aaKnown RBP11.45□□□□□ -0.58
Trim39-201ENSMUST00000042717 Nlgn1Q99K10 843 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Astn2Q80Z10 1352 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Als2Q920R0 1651 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 MpripP97434 1024 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Usp19Q3UJD6 1360 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Tmem2Q5FWI3 1383 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 L3mbtl2P59178 703 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Mcm10Q0VBD2 885 aa11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Senp3Q9EP97 568 aaKnown RBP11.44□□□□□ -0.58
Trim39-201ENSMUST00000042717 Uhrf1bp1lA2RSJ4 1457 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Polr3glQ8R0C0 218 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Atxn3Q9CVD2 355 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Ltbp4Q8K4G1 1666 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Sipa1l2Q80TE4 1722 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Trim28Q62318 834 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Trim26Q99PN3 545 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Chd4Q6PDQ2 1915 aaKnown RBP11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Znf335A2A5K6 1337 aa11.43□□□□□ -0.58
Trim39-201ENSMUST00000042717 Ppp1r15aP17564 657 aa11.42□□□□□ -0.58
Trim39-201ENSMUST00000042717 Uspl1Q3ULM6 1089 aa11.42□□□□□ -0.58
Trim39-201ENSMUST00000042717 Tmem132eQ6IEE6 982 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Ccdc30Q8BVF4 654 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Wdr17E9Q271 1322 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Gm38655A0A286YDK6 273 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Apbb1Q9QXJ1 710 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 FancaQ9JL70 1439 aa11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Map4k4P97820 1233 aaKnown RBP11.41□□□□□ -0.58
Trim39-201ENSMUST00000042717 Eif4a2P10630 407 aa11.4□□□□□ -0.58
Trim39-201ENSMUST00000042717 Rangap1P46061 589 aaKnown RBP11.4□□□□□ -0.58
Trim39-201ENSMUST00000042717 Aplp2Q06335 707 aa11.4□□□□□ -0.58
Trim39-201ENSMUST00000042717 Calr4Q3TQS0 420 aa11.4□□□□□ -0.58
Trim39-201ENSMUST00000042717 Rsph6aQ8CDR2 708 aa11.4□□□□□ -0.58
Trim39-201ENSMUST00000042717 SafbD3YXK2 937 aaKnown RBP11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Gas2l2Q5SSG4 860 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 TimelessQ9R1X4 1197 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Hoxb7P09024 217 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Dusp27Q148W8 1138 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Ccne1Q61457 408 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Kcna6Q61923 529 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 TatQ8QZR1 454 aa11.39□□□□□ -0.59
Trim39-201ENSMUST00000042717 Kif1aP33173 1695 aa11.38□□□□□ -0.59
Trim39-201ENSMUST00000042717 Cabp2Q9JLK4 216 aa11.38□□□□□ -0.59
Trim39-201ENSMUST00000042717 Pik3c2aQ61194 1686 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Dixdc1Q80Y83 711 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Dzip1Q8BMD2 852 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Bcl11bQ99PV8 884 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Mon2Q80TL7 1715 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Cdk12Q14AX6 1484 aaKnown RBP11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Brinp3Q499E0 766 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Erbb3Q61526 1339 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Ralbp1Q62172 648 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Gimap6Q8K349 305 aa11.37□□□□□ -0.59
Trim39-201ENSMUST00000042717 Dnajc10Q9DC23 793 aa11.36□□□□□ -0.59
Trim39-201ENSMUST00000042717 Unc13bQ9Z1N9 1602 aa11.36□□□□□ -0.59
Trim39-201ENSMUST00000042717 CemipQ8BI06 1361 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Ksr2Q3UVC0 959 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Cavin4A2AMM0 362 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Hoxc9P09633 260 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Stk31Q99MW1 1018 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Col18a1P39061 1774 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 TnikP83510 1323 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Col16a1Q8BLX7 1580 aa11.35□□□□□ -0.59
Trim39-201ENSMUST00000042717 Acsbg1Q99PU5 721 aa11.34□□□□□ -0.59
Trim39-201ENSMUST00000042717 Larp1bA0A0A6YXJ7 370 aaKnown RBP11.34□□□□□ -0.59
Trim39-201ENSMUST00000042717 Gm21698A0A087WQP8 267 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Gm21671G3UY31 267 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Eya1P97767 591 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Fchsd2Q3USJ8 740 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Q4VA45 678 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Ncapd2Q8K2Z4 1392 aa11.33□□□□□ -0.6
Trim39-201ENSMUST00000042717 Upf2A2AT37 1269 aaKnown RBP11.32□□□□□ -0.6
Trim39-201ENSMUST00000042717 Fmnl2A2APV2 1086 aa11.32□□□□□ -0.6
Trim39-201ENSMUST00000042717 Swt1Q9DBQ9 907 aa11.32□□□□□ -0.6
Retrieved 100 of 22,080 RNA–protein pairs in 43.1 ms