RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MPP7Q5T2T1 576 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 MBLAC2Q68D91 279 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 C1orf228Q6PIY5 440 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 CHST9Q7L1S5 443 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 SYT13Q7L8C5 426 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 MFN1Q8IWA4 741 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 TP53INP2Q8IXH6 220 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 SYNPOQ8N3V7 929 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 ZNF513Q8N8E2 541 aaPredicted RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 HJURPQ8NCD3 748 aaPredicted RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 MSANTD4Q8NCY6 345 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 RNF34Q969K3 372 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 XPO6Q96QU8 1125 aaKnown RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 GABRG3Q99928 467 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 CNPY3Q9BT09 278 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 TRIM62Q9BVG3 475 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 NUP85Q9BW27 656 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 KLC2Q9H0B6 622 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 THAP10Q9P2Z0 257 aaPredicted RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 GGA2Q9UJY4 613 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 MMP17Q9ULZ9 603 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 BZW2Q9Y6E2 419 aaKnown RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 DOCK9Q9BZ29 2069 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 PLXND1Q9Y4D7 1925 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 KMT2BQ9UMN6 2715 aaPredicted RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 F5H5T6 163 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 DCLK1O15075 740 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 NCAM2O15394 837 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 SNAP91O60641 907 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 LCA5LO95447 670 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 CD160O95971 181 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 TPM3P06753 285 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 VAV1P15498 845 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 GABRG2P18507 467 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 PSMA2P25787 234 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 MAGEA9P43362 315 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 MRPS21P82921 87 aaKnown RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 AMPD2Q01433 879 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 SLC25A11Q02978 314 aaKnown RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 SCAPQ12770 1279 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 ZNF234Q14588 700 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 CRY1Q16526 586 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 PLEKHG6Q3KR16 790 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 FBXO43Q4G163 708 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 PITRM1Q5JRX3 1037 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 HEATR6Q6AI08 1181 aaKnown RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 ANKS1BQ7Z6G8 1248 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 TFAP2DQ7Z6R9 452 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 RASSF3Q86WH2 238 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 SPC24Q8NBT2 197 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 ZBTB44Q8NCP5 570 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 MDGA1Q8NFP4 955 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 NTAN1Q96AB6 310 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 TTC17Q96AE7 1141 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 C1orf74Q96LT6 269 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 RPRD1AQ96P16 312 aaPredicted RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 HAPLN3Q96S86 360 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 KCTD15Q96SI1 283 aaPredicted RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 SNRNP25Q9BV90 132 aaKnown RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 SLC2A11Q9BYW1 496 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 OSBPL2Q9H1P3 480 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 TMEM245Q9H330 911 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 PARVAQ9NVD7 372 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 ELOVL2Q9NXB9 296 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 EBF1Q9UH73 591 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 PCSK1NQ9UHG2 260 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 SLCO3A1Q9UIG8 710 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 FBXO4Q9UKT5 387 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 INVSQ9Y283 1065 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 TBC1D30Q9Y2I9 924 aa9.5□□□□□ -0.89
VPS35-206ENST00000565228 ZFHX2Q9C0A1 2572 aaPredicted RBP9.5□□□□□ -0.89
VPS35-206ENST00000565228 CEP192Q8TEP8 1941 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ANKRD62A6NC57 917 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 TTC34A8MYJ7 566 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 LAMTOR5O43504 91 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 SRGAP2O75044 1071 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ZMPSTE24O75844 475 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 MT-CO1P00395 513 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 F9P00740 461 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 CD48P09326 243 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 BCKDHBP21953 392 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 IL4RP24394 825 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 CDC25BP30305 580 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ACVRL1P37023 503 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ARSEP51690 589 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 PLK1P53350 603 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 NUBP1P53384 320 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 METAP1P53582 386 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 COPAP53621 1224 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 FOXK2Q01167 660 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 NRG1Q02297 640 aaPredicted RBP9.49□□□□□ -0.89
VPS35-206ENST00000565228 KCNT1Q5JUK3 1230 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 FAM182AQ5T1J6 154 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 SCYL2Q6P3W7 929 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 DCUN1D2Q6PH85 259 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 CNGA4Q8IV77 575 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 SUMF1Q8NBK3 374 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ACRBPQ8NEB7 543 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 OR7D4Q8NG98 312 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms