RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RINT1Q6NUQ1 792 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 ARHGAP11AQ6P4F7 1023 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 LINC00696Q6ZRV3 163 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 SYCP3Q8IZU3 236 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 CARFQ8N187 725 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 VPS52Q8N1B4 723 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 Q8N1Y9 231 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 MRPL43Q8N983 215 aaKnown RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM71DQ8N9W8 422 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 HIPK4Q8NE63 616 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 GPR156Q8NFN8 814 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 ZCCHC10Q8TBK6 192 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 TNPO1Q92973 898 aaKnown RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 LRRC59Q96AG4 307 aaKnown RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 COG3Q96JB2 828 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 NLRP4Q96MN2 994 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 AGAP3Q96P47 875 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 NAA11Q9BSU3 229 aaPredicted RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 INTS2Q9H0H0 1204 aaKnown RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 KAT14Q9H8E8 782 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 SLC6A20Q9NP91 592 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 TCF7L2Q9NQB0 619 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS29-210ENST00000552130 POLE3Q9NRF9 147 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 PCDHB16Q9NRJ7 776 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 ZNF70Q9UC06 446 aaPredicted RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 SARDHQ9UL12 918 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 TRAF3IP3Q9Y228 551 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 COA3Q9Y2R0 106 aaPredicted RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 PCDHB6Q9Y5E3 794 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 COL15A1P39059 1388 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CYP2D7A0A087X1C5 515 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ZSCAN5CA6NGD5 496 aaPredicted RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 SAC3D1A6NKF1 404 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 RRP9O43818 475 aaKnown RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 ANXA6P08133 673 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 INHBAP08476 426 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 KRT4P19013 534 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 PAX7P23759 505 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ADRA1BP35368 520 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CASP3P42574 277 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 RABIFP47224 123 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CPA2P48052 419 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 SLC6A9P48067 706 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 NRIP1P48552 1158 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 GPR15P49685 360 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 NPY4RP50391 375 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CPT1AP50416 773 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ACTR1AP61163 376 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 YPEL5P62699 121 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 COG7P83436 770 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 PRR5P85299 388 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ROM1Q03395 351 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 DEUP1Q05D60 604 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 LMAN2Q12907 356 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 PDCLQ13371 301 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 HABP2Q14520 560 aaPredicted RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 PCLAFQ15004 111 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 INAQ16352 499 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 MEP1BQ16820 701 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 GALNTL6Q49A17 601 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ZNF484Q5JVG2 852 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 C12orf60Q5U649 245 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 TPGS2Q68CL5 300 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 MRNIPQ6NTE8 343 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 TMEM154Q6P9G4 183 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 KLHL35Q6PF15 583 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 NCEH1Q6PIU2 408 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 ISLR2Q6UXK2 745 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 GBP6Q6ZN66 633 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 B3GNT8Q7Z7M8 397 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 RASGRP3Q8IV61 690 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 SIX6OS1Q8N1H7 587 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CDYL2Q8N8U2 506 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 NEK9Q8TD19 979 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 HASPINQ8TF76 798 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 NOC3LQ8WTT2 800 aaKnown RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 HOXB13Q92826 284 aaPredicted RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 GIMAP5Q96F15 307 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CMTM3Q96MX0 182 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CTAGE1Q96RT6 745 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 PKP4Q99569 1192 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 TUBB6Q9BUF5 446 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 HTATIP2Q9BUP3 242 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 UTP14AQ9BVJ6 771 aaKnown RBP6.58□□□□□ -1.36
VPS29-210ENST00000552130 NELFAQ9H3P2 528 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 C17orf75Q9HAS0 396 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 TM9SF3Q9HD45 589 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 SMPD4Q9NXE4 827 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 PPP1R14DQ9NXH3 145 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 EHD2Q9NZN4 543 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 COX16Q9P0S2 106 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 CLIP2Q9UDT6 1046 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 SLCO3A1Q9UIG8 710 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 TSPYL4Q9UJ04 414 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 APPL1Q9UKG1 709 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 BTBD3Q9Y2F9 522 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 WDR37Q9Y2I8 494 aa6.58□□□□□ -1.36
VPS29-210ENST00000552130 FAM90A20PA6NIJ5 464 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms