RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 WDR6Q9NNW5 1121 aaKnown RBP12.52□□□□□ -0.41
USF1-203ENST00000368021 PRDM6Q9NQX0 595 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 ENTPD7Q9NQZ7 604 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 TLR9Q9NR96 1032 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.52□□□□□ -0.41
USF1-203ENST00000368021 PIGVQ9NUD9 493 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 RCOR3Q9P2K3 495 aaPredicted RBP12.52□□□□□ -0.41
USF1-203ENST00000368021 FZD10Q9ULW2 581 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 MAFFQ9ULX9 164 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 AP4E1Q9UPM8 1137 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 R3HDM2Q9Y2K5 976 aaKnown RBP12.52□□□□□ -0.41
USF1-203ENST00000368021 MYO16Q9Y6X6 1858 aa12.52□□□□□ -0.41
USF1-203ENST00000368021 APOC4-APOC2K7ER74 178 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 PER2O15055 1255 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 CST8O60676 142 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 ZMYND10O75800 440 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 APOC2P02655 101 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 ATF2P15336 505 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 IL4RP24394 825 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 YWHAQP27348 245 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 L1CAMP32004 1257 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 LMAN1P49257 510 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 GPR15P49685 360 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DRG2P55039 364 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 LMNB2Q03252 620 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 EIF4EBP2Q13542 120 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 CUL1Q13616 776 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 RAB33AQ14088 237 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 CRYMQ14894 314 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 PLPP4Q5VZY2 271 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 SYDE1Q6ZW31 735 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 SND1Q7KZF4 910 aaKnown RBP eCLIP12.51□□□□□ -0.41
USF1-203ENST00000368021 SCD5Q86SK9 330 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 CCDC185Q8N715 623 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 EDEM1Q92611 657 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 RNF157Q96PX1 679 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 SEPT5Q99719 369 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 ERP44Q9BS26 406 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 MAK16Q9BXY0 300 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 SMOC2Q9H3U7 446 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 PRDM16Q9HAZ2 1276 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DDIT4Q9NX09 232 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 FNIP2Q9P278 1114 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 SSX2IPQ9Y2D8 614 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 SLC27A5Q9Y2P5 690 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 PLXNA4Q9HCM2 1894 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 C2CD2LO14523 706 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 LIASO43766 372 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 ECEL1O95672 775 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 RPL17P18621 184 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 POU3F3P20264 500 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 GBP1P32455 592 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 CXCR3P49682 368 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 USP46P62068 366 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 IFRD2Q12894 506 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 NME3Q13232 169 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 BYSLQ13895 437 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 CA9Q16790 459 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 ARL13BQ3SXY8 428 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 TCEAL5Q5H9L2 206 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 SDHAF4Q5VUM1 108 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DUPD1Q68J44 220 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 ADGRD2Q7Z7M1 963 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 RFX6Q8HWS3 928 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DQX1Q8TE96 717 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 ATG4AQ8WYN0 398 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 NKD2Q969F2 451 aaPredicted RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 TTLL2Q9BWV7 592 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DHX35Q9H5Z1 703 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 FAM204AQ9H8W3 233 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 MRPL17Q9NRX2 175 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 GPATCH2LQ9NWQ4 482 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 CLIC5Q9NZA1 410 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.51□□□□□ -0.41
USF1-203ENST00000368021 LMCD1Q9NZU5 365 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 FBXW11Q9UKB1 542 aa12.51□□□□□ -0.41
USF1-203ENST00000368021 DRG1Q9Y295 367 aaKnown RBP12.51□□□□□ -0.41
USF1-203ENST00000368021 A0A1W2PQH9 124 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 ZSCAN5CA6NGD5 496 aaPredicted RBP12.5□□□□□ -0.41
USF1-203ENST00000368021 HIDE1A8MVS5 230 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 LILRB3O75022 631 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 GAS8O95995 478 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 ATF6P18850 670 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 ADRA1BP35368 520 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 KCNJ1P48048 391 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 ZNF135P52742 658 aaPredicted RBP12.5□□□□□ -0.41
USF1-203ENST00000368021 MMRN1Q13201 1228 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 ANKRD20A8PQ5CZ79 823 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 EFHC2Q5JST6 749 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 BEND6Q5SZJ8 279 aaPredicted RBP12.5□□□□□ -0.41
USF1-203ENST00000368021 SLC9A4Q6AI14 798 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 MSANTD2Q6P1R3 559 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 TAC4Q86UU9 113 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 SLC35B2Q8TB61 432 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.5□□□□□ -0.41
USF1-203ENST00000368021 ZBP1Q9H171 429 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 NMUR1Q9HB89 426 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 RXFP1Q9HBX9 757 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 FAM114A2Q9NRY5 505 aa12.5□□□□□ -0.41
USF1-203ENST00000368021 BRWD1Q9NSI6 2320 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms