RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 ADCY8P40145 1251 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 ARL4AP40617 200 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 IFRD2Q12894 506 aaPredicted RBP18.85■□□□□ 0.61
VIM-201ENST00000224237 NOMO1Q15155 1222 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 RNF168Q8IYW5 571 aaPredicted RBP18.85■□□□□ 0.61
VIM-201ENST00000224237 PQLC3Q8N755 202 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 TSEN2Q8NCE0 465 aaKnown RBP18.85■□□□□ 0.61
VIM-201ENST00000224237 BBOF1Q8ND07 529 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 TMEM121Q9BTD3 319 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 FBXO44Q9H4M3 255 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 FAM204AQ9H8W3 233 aa18.85■□□□□ 0.61
VIM-201ENST00000224237 WDR6Q9NNW5 1121 aaKnown RBP18.85■□□□□ 0.61
VIM-201ENST00000224237 MTMR11A4FU01 709 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 CARNS1A5YM72 827 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 GOLGA6BA6NDN3 693 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 SGK1O00141 431 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 IVDP26440 423 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ARPP19P56211 112 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 EIF3EP60228 445 aaKnown RBP18.84■□□□□ 0.61
VIM-201ENST00000224237 YWHAGP61981 247 aaKnown RBP eCLIP18.84■□□□□ 0.61
VIM-201ENST00000224237 CAV1Q03135 178 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 GABPB1Q06547 395 aaPredicted RBP18.84■□□□□ 0.61
VIM-201ENST00000224237 EFHC2Q5JST6 749 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 SPOUT1Q5T280 376 aaKnown RBP18.84■□□□□ 0.61
VIM-201ENST00000224237 RSPO2Q6UXX9 243 aaPredicted RBP18.84■□□□□ 0.61
VIM-201ENST00000224237 TMC3Q7Z5M5 1100 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 PLD5Q8N7P1 536 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ATAD1Q8NBU5 361 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ADAM32Q8TC27 787 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 PRDM16Q9HAZ2 1276 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 MYO16Q9Y6X6 1858 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 PTPRSQ13332 1948 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 SCAPQ12770 1279 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 MTMR3Q13615 1198 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 DDR2Q16832 855 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ARL13BQ3SXY8 428 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 BTBD8Q5XKL5 378 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ALS2CLQ60I27 953 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 KCNT2Q6UVM3 1135 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 C16orf59Q7L2K0 433 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 CMTR2Q8IYT2 770 aaKnown RBP18.84■□□□□ 0.61
VIM-201ENST00000224237 STKLD1Q8NE28 680 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 ZNF558Q96NG5 402 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 CSPG4P5Q96PW8 444 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 VN1R3Q9BXE9 311 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 PCDH9Q9HC56 1237 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.84■□□□□ 0.61
VIM-201ENST00000224237 MTRRQ9UBK8 725 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 SCML2Q9UQR0 700 aa18.84■□□□□ 0.61
VIM-201ENST00000224237 RBP3P10745 1247 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 ADRA1BP35368 520 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 VPS41P49754 854 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 PRSS55Q6UWB4 352 aaPredicted RBP18.83■□□□□ 0.6
VIM-201ENST00000224237 FBXO22Q8NEZ5 403 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 PIK3R5Q8WYR1 880 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 CWC15Q9P013 229 aaKnown RBP18.83■□□□□ 0.6
VIM-201ENST00000224237 FBXW11Q9UKB1 542 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 BACE2Q9Y5Z0 518 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 CDY1Q9Y6F8 540 aa18.83■□□□□ 0.6
VIM-201ENST00000224237 PLXNA3P51805 1871 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 GPR15P49685 360 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 DHX9Q08211 1270 aaKnown RBP18.82■□□□□ 0.6
VIM-201ENST00000224237 BTG3Q14201 252 aaPredicted RBP18.82■□□□□ 0.6
VIM-201ENST00000224237 SPDYCQ5MJ68 293 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 SLC8B1Q6J4K2 584 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 NPNTQ6UXI9 565 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 RNF19BQ6ZMZ0 732 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 TAC4Q86UU9 113 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 PYROXD2Q8N2H3 581 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 TTC9BQ8N6N2 239 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 DQX1Q8TE96 717 aaKnown RBP18.82■□□□□ 0.6
VIM-201ENST00000224237 RSAD2Q8WXG1 361 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 RUFY1Q96T51 708 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 IL23AQ9NPF7 189 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 MED4Q9NPJ6 270 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 H3BRJ5 948 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 NDC80O14777 642 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 TP73O15350 636 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 PPFIA2O75334 1257 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 IFNB1P01574 187 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 IGLV3-25P01717 112 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 SOD2P04179 222 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 GOT1P17174 413 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 LAG3P18627 525 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 NR2C2P49116 596 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 CXCR3P49682 368 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 ROR1Q01973 937 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 PSMD5Q16401 504 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 MGAT5BQ3V5L5 792 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 HSP90B2PQ58FF3 399 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 CFAP58Q5T655 872 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 SDHAF4Q5VUM1 108 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 KIAA1841Q6NSI8 718 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 C1orf228Q6PIY5 440 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 DENND5BQ6ZUT9 1274 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 MON1AQ86VX9 555 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 ARHGAP18Q8N392 663 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 GLIS1Q8NBF1 620 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 RNF139Q8WU17 664 aa18.82■□□□□ 0.6
VIM-201ENST00000224237 RIN2Q8WYP3 895 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms