RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 WDR60Q8WVS4 1066 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 PAIP1Q9H074 479 aaKnown RBP19.89■□□□□ 0.78
USP48-201ENST00000308271 ZNF408Q9H9D4 720 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 LRRC4CQ9HCJ2 640 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 ATXN10Q9UBB4 475 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 E5RI56 91 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 S100A5P33763 92 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 VPS50Q96JG6 964 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 STXBP5LQ9Y2K9 1186 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 ADRB2P07550 413 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 FCGR1AP12314 374 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 HMGCS2P54868 508 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 NR1H2P55055 460 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 NAB1Q13506 487 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 PLEKHA7Q6IQ23 1121 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 APPL2Q8NEU8 664 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 SMARCAD1Q9H4L7 1026 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 CYP3A43Q9HB55 503 aa19.89■□□□□ 0.77
USP48-201ENST00000308271 PGM3O95394 542 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 FESP07332 822 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 PATL1Q86TB9 770 aaKnown RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 PCDHB18PQ96TA0 734 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 DISP2A7MBM2 1401 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 UMODL1Q5DID0 1318 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 TYW5A2RUC4 315 aaKnown RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 PDGFRBP09619 1106 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 GRTP1Q5TC63 336 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 KDELC2Q7Z4H8 507 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 OR9Q1Q8NGQ5 310 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 A0A087WXM4 84 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 TCRBV7S2A1N4TA0A589 114 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 TPBGLP0DKB5 382 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 WASHC5Q12768 1159 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 KRT72Q14CN4 511 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 ANO4Q32M45 955 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 Q3C1V9 767 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 PHF13Q86YI8 300 aaPredicted RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 CLVS1Q8IUQ0 354 aaPredicted RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 TMCO5AQ8N6Q1 288 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 COPS7BQ9H9Q2 264 aaPredicted RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 SCN3BQ9NY72 215 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 HNRNPRO43390 633 aaKnown RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 MIPP30301 263 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 GLRBP48167 497 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 PPM1FP49593 454 aaPredicted RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 MRPS22P82650 360 aaKnown RBP19.88■□□□□ 0.77
USP48-201ENST00000308271 SLC1A5Q15758 541 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 ATP13A4Q4VNC1 1196 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 ZDHHC24Q6UX98 284 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 UNC45BQ8IWX7 931 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 IPMKQ8NFU5 416 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 MKL1Q969V6 931 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 AP4E1Q9UPM8 1137 aa19.88■□□□□ 0.77
USP48-201ENST00000308271 A0A0B4J269 797 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 ZNF23P17027 643 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 RHBDL3P58872 404 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 DEFA1P59665 94 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 DEFA3P59666 94 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 DAB2P98082 770 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 ORC1Q13415 861 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 TWF2Q6IBS0 349 aaKnown RBP19.87■□□□□ 0.77
USP48-201ENST00000308271 LRRC71Q8N4P6 559 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 DGCR14Q96DF8 476 aaKnown RBP19.87■□□□□ 0.77
USP48-201ENST00000308271 TMEM176AQ96HP8 235 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 GPAMQ9HCL2 828 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 DDX4Q9NQI0 724 aaKnown RBP19.87■□□□□ 0.77
USP48-201ENST00000308271 ATF5Q9Y2D1 282 aaPredicted RBP19.87■□□□□ 0.77
USP48-201ENST00000308271 SPDYE2BA6NHP3 402 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 SMNDC1O75940 238 aaKnown RBP eCLIP19.87■□□□□ 0.77
USP48-201ENST00000308271 SUPT20HL2P0C7V6 817 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 SPDYE6P0CI01 402 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 BBS12Q6ZW61 710 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 C12orf56Q8IXR9 622 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 THEM5Q8N1Q8 247 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 COLGALT1Q8NBJ5 622 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 PDCD2LQ9BRP1 358 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 AP5M1Q9H0R1 490 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 SARS2Q9NP81 518 aaKnown RBP19.87■□□□□ 0.77
USP48-201ENST00000308271 KRT75O95678 551 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 CYP2F1P24903 491 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 AGKQ53H12 422 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 PEAK1Q9H792 1746 aa19.87■□□□□ 0.77
USP48-201ENST00000308271 ZNF839A8K0R7 811 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 BIRC5O15392 142 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 ANXA9O76027 345 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 SUPT7LO94864 414 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 MPZL3Q6UWV2 235 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 TSHZ1Q6ZSZ6 1077 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 NKX2-3Q8TAU0 364 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 SYTL5Q8TDW5 730 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 RIC8BQ9NVN3 520 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 ABCC6O95255 1503 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 hCG_1818297A0A087WSY0 165 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 UBDO15205 165 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 MAGEC1O60732 1142 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 TGDSO95455 350 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 TAL1P17542 331 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 PGAM1P18669 254 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 CLK1P49759 484 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms