RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 EPB41L4BQ9H329 900 aa23.64■■□□□ 1.37
CDX1-201ENST00000231656 ASNSD1Q9NWL6 643 aa23.64■■□□□ 1.37
CDX1-201ENST00000231656 ASIC3Q9UHC3 531 aa23.64■■□□□ 1.37
CDX1-201ENST00000231656 EFR3BQ9Y2G0 817 aa23.64■■□□□ 1.37
CDX1-201ENST00000231656 SLC4A7Q9Y6M7 1214 aa23.64■■□□□ 1.37
CDX1-201ENST00000231656 PCK1P35558 622 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 TSPY1Q01534 308 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 PLCB3Q01970 1234 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 MRPL58Q14197 206 aaKnown RBP23.63■■□□□ 1.37
CDX1-201ENST00000231656 SMTNL2Q2TAL5 461 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 LRRTM3Q86VH5 581 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 ZBED2Q9BTP6 218 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 DPYSL4O14531 572 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 RNF8O76064 485 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 TRUB2O95900 331 aaKnown RBP23.63■■□□□ 1.37
CDX1-201ENST00000231656 LAG3P18627 525 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 ZNF844Q08AG5 666 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 CEP85LQ5SZL2 805 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 TAS1R1Q7RTX1 841 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 COLGALT1Q8NBJ5 622 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 OR2W6PQ8NHA6 318 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 FAM76AQ8TAV0 307 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 KHSRPQ92945 711 aaKnown RBP eCLIP23.63■■□□□ 1.37
CDX1-201ENST00000231656 SNF8Q96H20 258 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 MED10Q9BTT4 135 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 DUSP16Q9BY84 665 aa23.63■■□□□ 1.37
CDX1-201ENST00000231656 NLRC5Q86WI3 1866 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 ITIH2P19823 946 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 KDELR1P24390 212 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 RPL34P49207 117 aaKnown RBP23.62■■□□□ 1.37
CDX1-201ENST00000231656 PMS2P54278 862 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 SLC6A3Q01959 620 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 CALCOCO2Q13137 446 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 KCNT1Q5JUK3 1230 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 RTP2Q5QGT7 225 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 RHBDF2Q6PJF5 856 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 CMASQ8NFW8 434 aaPredicted RBP23.62■■□□□ 1.37
CDX1-201ENST00000231656 MYLPFQ96A32 169 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 PEBP4Q96S96 227 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 SLC9A7Q96T83 725 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 TMBIM4Q9HC24 238 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 TMLHEQ9NVH6 421 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 PCSK1NQ9UHG2 260 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 USP18Q9UMW8 372 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 INSL6Q9Y581 213 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 PTPRDP23468 1912 aa23.62■■□□□ 1.37
CDX1-201ENST00000231656 RANBP2P49792 3224 aaKnown RBP23.61■■□□□ 1.37
CDX1-201ENST00000231656 PAPSS1O43252 624 aaPredicted RBP23.61■■□□□ 1.37
CDX1-201ENST00000231656 PDGFRAP16234 1089 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 CYP4V2Q6ZWL3 525 aaPredicted RBP23.61■■□□□ 1.37
CDX1-201ENST00000231656 FAM35AQ86V20 835 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 HERC6Q8IVU3 1022 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 RNF168Q8IYW5 571 aaPredicted RBP23.61■■□□□ 1.37
CDX1-201ENST00000231656 SLC39A11Q8N1S5 342 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 PHOSPHO2Q8TCD6 241 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 TTPALQ9BTX7 342 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 VN1R3Q9BXE9 311 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 DNPEPQ9ULA0 475 aa23.61■■□□□ 1.37
CDX1-201ENST00000231656 ATF2P15336 505 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 NPR3P17342 541 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 KLRC2P26717 231 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 SNX16P57768 344 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 TAF5Q15542 800 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 TRIP13Q15645 432 aaPredicted RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 MAPRE1Q15691 268 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 CTXN3Q4LDR2 81 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 SH3PXD2AQ5TCZ1 1133 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 ZNF280DQ6N043 979 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 ZDHHC17Q8IUH5 632 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 ZCWPW1Q9H0M4 648 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 PABPC3Q9H361 631 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 KRT82Q9NSB4 513 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 CARNS1A5YM72 827 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 GRAP2O75791 330 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 BEST1O76090 585 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 OR4Q2P0C623 313 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 ATP2A2P16615 1042 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 LMNB2Q03252 620 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 BYSLQ13895 437 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 C15orf59Q2T9L4 293 aaPredicted RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 CCDC14Q49A88 953 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 CLEC20AQ6ZU45 233 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 SCUBE3Q8IX30 993 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 NKD2Q969F2 451 aaPredicted RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 TMEM169Q96HH4 297 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 MTIF3Q9H2K0 278 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 CYLDQ9NQC7 956 aa23.6■■□□□ 1.37
CDX1-201ENST00000231656 DRG1Q9Y295 367 aaKnown RBP23.6■■□□□ 1.37
CDX1-201ENST00000231656 XPO1O14980 1071 aaKnown RBP23.59■■□□□ 1.37
CDX1-201ENST00000231656 CD48P09326 243 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 FAM200BP0CF97 657 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 VCPP55072 806 aaKnown RBP23.59■■□□□ 1.37
CDX1-201ENST00000231656 SLC8A3P57103 927 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 OASLQ15646 514 aaKnown RBP23.59■■□□□ 1.37
CDX1-201ENST00000231656 USP41Q3LFD5 358 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 RAB6CQ53S08 254 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 RASIP1Q5U651 963 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 BBS12Q6ZW61 710 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 ANKS3Q6ZW76 656 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 FIBCD1Q8N539 461 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms