RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GAB3Q8WWW8 586 aa20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 LOXL4Q96JB6 756 aa20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 ZFRQ96KR1 1074 aaKnown RBP20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 TWNKQ96RR1 684 aa20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 DLL3Q9NYJ7 618 aa20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 SH3BP1Q9Y3L3 701 aa20.15■□□□□ 0.82
CCDC28A-203ENST00000617445 MYO16Q9Y6X6 1858 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 TLR5O60602 858 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 CD58P19256 250 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 TGM1P22735 817 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 PSEN1P49768 467 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 GAB4Q2WGN9 574 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 RHBDF2Q6PJF5 856 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 CACNA2D4Q7Z3S7 1137 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 EZH1Q92800 747 aaPredicted RBP20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 PNKPQ96T60 521 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 DUSP16Q9BY84 665 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 CCSER2Q9H7U1 834 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 CYLDQ9NQC7 956 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 EBF1Q9UH73 591 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 USP18Q9UMW8 372 aa20.14■□□□□ 0.81
CCDC28A-203ENST00000617445 A0A0A0MRY4 1105 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 HHLA1C9JL84 531 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 RPP40O75818 363 aaKnown RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 APBB3O95704 486 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 ADH5P11766 374 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 ATP5C1P36542 298 aaKnown RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 MRPS21P82921 87 aaKnown RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 GAD2Q05329 585 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 GOLGA8FQ08AF8 430 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 GOLGA8DPQ0D2H9 430 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 DMC1Q14565 340 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 LPAL2Q16609 132 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 HSF5Q4G112 596 aaPredicted RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 ANKRD40Q6AI12 368 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 KLHDC10Q6PID8 442 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 ZNF276Q8N554 614 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 USP33Q8TEY7 942 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 SEMA4DQ92854 862 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 EEF2KMTQ96G04 330 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 DHTKD1Q96HY7 919 aaPredicted RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 HEXIM2Q96MH2 286 aaKnown RBP20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 UBXN6Q9BZV1 441 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 COQ4Q9Y3A0 265 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 KIAA1549LQ6ZVL6 1849 aa20.13■□□□□ 0.81
CCDC28A-203ENST00000617445 MYO18AQ92614 2054 aaKnown RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 K7EQS6 105 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 PSMA7O14818 248 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 AXIN1O15169 862 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 APODP05090 189 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 ACO1P21399 889 aaKnown RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 KIF11P52732 1056 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 SRSF5Q13243 272 aaKnown RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 RSPO4Q2I0M5 234 aaPredicted RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 TCERG1LQ5VWI1 586 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 BTBD8Q5XKL5 378 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 NUDT18Q6ZVK8 323 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 HTR3DQ70Z44 454 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 TADA2BQ86TJ2 420 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 FAM160A2Q8N612 972 aaPredicted RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 TMEM176AQ96HP8 235 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 CDK5RAP1Q96SZ6 601 aaKnown RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 METTL14Q9HCE5 456 aaKnown RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 CISHQ9NSE2 258 aa20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 ARMCX3Q9UH62 379 aaPredicted RBP20.12■□□□□ 0.81
CCDC28A-203ENST00000617445 CCDC192P0DO97 292 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 GRIA2P42262 883 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 TNFRSF4P43489 277 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 SLC8A3P57103 927 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 YWHAEP62258 255 aaKnown RBP20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 SPEM2Q0P670 501 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 CSRP2Q16527 193 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 LY6G5CQ5SRR4 150 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 PPP1R26Q5T8A7 1209 aaPredicted RBP20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 DGLUCYQ7Z3D6 616 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 CCDC186Q7Z3E2 898 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 ZC3H10Q96K80 434 aaKnown RBP20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 PARD6AQ9NPB6 346 aa20.11■□□□□ 0.81
CCDC28A-203ENST00000617445 HOXC11O43248 304 aaPredicted RBP20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 KAT7O95251 611 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 PXNP49023 591 aaPredicted RBP20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 ZNF394Q53GI3 561 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 DCAF17Q5H9S7 520 aaPredicted RBP20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 ARHGAP17Q68EM7 881 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 FOXR2Q6PJQ5 311 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 GPRIN1Q7Z2K8 1008 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 KCNV2Q8TDN2 545 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 CEP63Q96MT8 703 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 HHIPQ96QV1 700 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 KLF16Q9BXK1 252 aaPredicted RBP20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 SPHK2Q9NRA0 654 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 DNMT3LQ9UJW3 386 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 LSM7Q9UK45 103 aaKnown RBP20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 MMP17Q9ULZ9 603 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 USP3Q9Y6I4 520 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 EML5Q05BV3 1969 aa20.1■□□□□ 0.81
CCDC28A-203ENST00000617445 PMM2O15305 246 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CYP26A1O43174 497 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms