RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 KIF11P52732 1056 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 RAD23BP54727 409 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 DHCR24Q15392 516 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 DCAF17Q5H9S7 520 aaPredicted RBP20.48■□□□□ 0.87
USP40-207ENST00000450940 ISM2Q6H9L7 571 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 TTI2Q6NXR4 508 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 RHBDF2Q6PJF5 856 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 ZNF276Q8N554 614 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 DCLK2Q8N568 766 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 TMEM176AQ96HP8 235 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 ARID3AQ99856 593 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 UBXN6Q9BZV1 441 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 CYLDQ9NQC7 956 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 USP3Q9Y6I4 520 aa20.48■□□□□ 0.87
USP40-207ENST00000450940 CCDC163A0A0D9SF12 145 aa20.47■□□□□ 0.87
USP40-207ENST00000450940 HRO43593 1189 aa20.47■□□□□ 0.87
USP40-207ENST00000450940 ZNF394Q53GI3 561 aa20.47■□□□□ 0.87
USP40-207ENST00000450940 ARHGAP17Q68EM7 881 aa20.47■□□□□ 0.87
USP40-207ENST00000450940 WDR5BQ86VZ2 330 aa20.47■□□□□ 0.87
USP40-207ENST00000450940 HEXIM2Q96MH2 286 aaKnown RBP20.47■□□□□ 0.87
USP40-207ENST00000450940 EML5Q05BV3 1969 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 TLR5O60602 858 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 ACO1P21399 889 aaKnown RBP20.46■□□□□ 0.87
USP40-207ENST00000450940 HOXC13P31276 330 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 EIF2DP41214 584 aaKnown RBP20.46■□□□□ 0.87
USP40-207ENST00000450940 KLHDC10Q6PID8 442 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 CCDC186Q7Z3E2 898 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 CAMKK1Q8N5S9 505 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 CCDC26Q8TAB7 109 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 KLF16Q9BXK1 252 aaPredicted RBP20.46■□□□□ 0.87
USP40-207ENST00000450940 OSER1Q9NX31 292 aa20.46■□□□□ 0.87
USP40-207ENST00000450940 A0A0A0MRY4 1105 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 CYP26A1O43174 497 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 GREM1O60565 184 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 FMO5P49326 533 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 PSEN1P49768 467 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 CUL2Q13617 745 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 HTR3DQ70Z44 454 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 SYT13Q7L8C5 426 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 UBR7Q8N806 425 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 NELFBQ8WX92 580 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 NMUR1Q9HB89 426 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 NCDNQ9UBB6 729 aa20.45■□□□□ 0.86
USP40-207ENST00000450940 BICDL2A1A5D9 508 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 K7EQS6 105 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SCAMP3O14828 347 aaKnown RBP20.44■□□□□ 0.86
USP40-207ENST00000450940 TBX18O95935 607 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 ADH1CP00326 375 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 ATP5C1P36542 298 aaKnown RBP20.44■□□□□ 0.86
USP40-207ENST00000450940 RAB41Q5JT25 222 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 HEATR6Q6AI08 1181 aaKnown RBP20.44■□□□□ 0.86
USP40-207ENST00000450940 LAIR1Q6GTX8 287 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SCD5Q86SK9 330 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 KIAA2013Q8IYS2 634 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 GPR161Q8N6U8 529 aaKnown RBP20.44■□□□□ 0.86
USP40-207ENST00000450940 ANKRD52Q8NB46 1076 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 RPLP0P6Q8NHW5 317 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SECISBP2LQ93073 1101 aaKnown RBP20.44■□□□□ 0.86
USP40-207ENST00000450940 WBP2Q969T9 261 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 JAKMIP2Q96AA8 810 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 HINFPQ9BQA5 517 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.44■□□□□ 0.86
USP40-207ENST00000450940 CLIC5Q9NZA1 410 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SLC8A2Q9UPR5 921 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SH3BP1Q9Y3L3 701 aa20.44■□□□□ 0.86
USP40-207ENST00000450940 SPAG17Q6Q759 2223 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 A0A1W2PQH9 124 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 P4HA2O15460 535 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 CHRM1P11229 460 aaPredicted RBP20.43■□□□□ 0.86
USP40-207ENST00000450940 ADH5P11766 374 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 TGM1P22735 817 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 MARSP56192 900 aaKnown RBP20.43■□□□□ 0.86
USP40-207ENST00000450940 UBE2HP62256 183 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 YWHAEP62258 255 aaKnown RBP20.43■□□□□ 0.86
USP40-207ENST00000450940 SIM2Q14190 667 aaPredicted RBP20.43■□□□□ 0.86
USP40-207ENST00000450940 LY6G5CQ5SRR4 150 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 KLHL10Q6JEL2 608 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 TRIML1Q8N9V2 468 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 LMO3Q8TAP4 145 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 USP33Q8TEY7 942 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 ACDQ96AP0 544 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 NACA2Q9H009 215 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 CHMP5Q9NZZ3 219 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 RAB23Q9ULC3 237 aa20.43■□□□□ 0.86
USP40-207ENST00000450940 DCHS1Q96JQ0 3298 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 CEP250Q9BV73 2442 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 BIN1O00499 593 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 HOXC11O43248 304 aaPredicted RBP20.42■□□□□ 0.86
USP40-207ENST00000450940 RARGP13631 454 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 TBXAS1P24557 533 aaPredicted RBP20.42■□□□□ 0.86
USP40-207ENST00000450940 SLC6A11P48066 632 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 GAD2Q05329 585 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 SRSF5Q13243 272 aaKnown RBP20.42■□□□□ 0.86
USP40-207ENST00000450940 CCDC40Q4G0X9 1142 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 TTC30AQ86WT1 665 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 BBS7Q8IWZ6 715 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 ETFBKMTQ8IXQ9 262 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 PHTF2Q8N3S3 785 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 PNKPQ96T60 521 aa20.42■□□□□ 0.86
USP40-207ENST00000450940 KIAA1257Q9ULG3 409 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 335 ms