RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTF4	YPR135W	EMP47	P43555	445 aa		3.05	□□□□□ -1.92
CTF4	YPR135W	SPT2	P06843	333 aa	Predicted RBP	3.04	□□□□□ -1.92
CTF4	YPR135W	YCK2	P23292	546 aa	Known RBP	3.04	□□□□□ -1.92
CTF4	YPR135W	SPP41	P38904	1435 aa		3.04	□□□□□ -1.92
CTF4	YPR135W	TBS1	P38114	1094 aa		3.04	□□□□□ -1.92
CTF4	YPR135W	MCX1	P38323	520 aa	Predicted RBP	3.04	□□□□□ -1.92
CTF4	YPR135W	BOI2	P39969	1040 aa		3.04	□□□□□ -1.92
CTF4	YPR135W	ALA1	P40825	983 aa	Known RBP	3.04	□□□□□ -1.92
CTF4	YPR135W	VTH1	P40438	1549 aa		3.03	□□□□□ -1.92
CTF4	YPR135W	VTH2	P40890	1549 aa		3.03	□□□□□ -1.92
CTF4	YPR135W	HAL5	P38970	855 aa	Known RBP	3.03	□□□□□ -1.92
CTF4	YPR135W	SLN1	P39928	1220 aa	Predicted RBP	3.03	□□□□□ -1.92
CTF4	YPR135W	MCM16	Q12262	181 aa		3.03	□□□□□ -1.92
CTF4	YPR135W	FPS1	P23900	669 aa		3.03	□□□□□ -1.92
CTF4	YPR135W	YDR215C	Q12240	137 aa		3.03	□□□□□ -1.92
CTF4	YPR135W	APL6	P46682	809 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	JJJ2	P46997	583 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	MCA1	Q08601	432 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	USO1	P25386	1790 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	CHC1	P22137	1653 aa	Known RBP	3.02	□□□□□ -1.93
CTF4	YPR135W	SSN2	P38931	1420 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	GDB1	Q06625	1536 aa		3.02	□□□□□ -1.93
CTF4	YPR135W	IRE1	P32361	1115 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	SHM1	P37292	490 aa	Predicted RBP	3.01	□□□□□ -1.93
CTF4	YPR135W	AMN1	P38285	549 aa	Predicted RBP	3.01	□□□□□ -1.93
CTF4	YPR135W	SUM1	P46676	1062 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	MRX12	P47084	519 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	MRPL16	P38064	232 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	TSC11	P40061	1430 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	PDR10	P51533	1564 aa		3.01	□□□□□ -1.93
CTF4	YPR135W	KIN1	P13185	1064 aa		3	□□□□□ -1.93
CTF4	YPR135W	STB3	Q12427	513 aa		3	□□□□□ -1.93
CTF4	YPR135W	SMC4	Q12267	1418 aa		3	□□□□□ -1.93
CTF4	YPR135W	PSH1	Q12161	406 aa		3	□□□□□ -1.93
CTF4	YPR135W	PDR12	Q02785	1511 aa		3	□□□□□ -1.93
CTF4	YPR135W	YDJ1	P25491	409 aa	Known RBP	3	□□□□□ -1.93
CTF4	YPR135W	SLX8	P40072	274 aa		3	□□□□□ -1.93
CTF4	YPR135W	PDC6	P26263	563 aa	Known RBP	2.99	□□□□□ -1.93
CTF4	YPR135W	SOH1	P38633	127 aa		2.99	□□□□□ -1.93
CTF4	YPR135W	IQG1	Q12280	1495 aa		2.99	□□□□□ -1.93
CTF4	YPR135W	PDC5	P16467	563 aa	Known RBP	2.99	□□□□□ -1.93
CTF4	YPR135W	TAT1	P38085	619 aa		2.99	□□□□□ -1.93
CTF4	YPR135W	HDA3	Q06623	655 aa		2.99	□□□□□ -1.93
CTF4	YPR135W	SNQ2	P32568	1501 aa	Known RBP	2.98	□□□□□ -1.93
CTF4	YPR135W	MET1	P36150	593 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	YBL036C	P38197	257 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	LSB6	P42951	607 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	PRY1	P47032	299 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	CSE4	P36012	229 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	MLP2	P40457	1679 aa		2.98	□□□□□ -1.93
CTF4	YPR135W	MYO4	P32492	1471 aa		2.97	□□□□□ -1.93
CTF4	YPR135W	KNS1	P32350	737 aa	Predicted RBP	2.97	□□□□□ -1.93
CTF4	YPR135W	GUA1	P38625	525 aa	Known RBP	2.97	□□□□□ -1.93
CTF4	YPR135W	YOR1	P53049	1477 aa		2.97	□□□□□ -1.93
CTF4	YPR135W	SPT5	P27692	1063 aa	Known RBP	2.97	□□□□□ -1.93
CTF4	YPR135W	MAC1	P35192	417 aa		2.97	□□□□□ -1.93
CTF4	YPR135W	TY1A-DR2	Q03964	440 aa	Known RBP	2.97	□□□□□ -1.93
CTF4	YPR135W	BUD3	P25558	1636 aa		2.97	□□□□□ -1.93
CTF4	YPR135W	TAF7	Q05021	590 aa		2.96	□□□□□ -1.94
CTF4	YPR135W	TY3B-G	Q99315	1547 aa		2.96	□□□□□ -1.94
CTF4	YPR135W	SPR3	P41901	512 aa		2.95	□□□□□ -1.94
CTF4	YPR135W	POL1	P13382	1468 aa		2.95	□□□□□ -1.94
CTF4	YPR135W	RPS31	P05759	152 aa	Known RBP	2.95	□□□□□ -1.94
CTF4	YPR135W	ATG3	P40344	310 aa		2.95	□□□□□ -1.94
CTF4	YPR135W	ALO1	P54783	526 aa	Known RBP	2.95	□□□□□ -1.94
CTF4	YPR135W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
CTF4	YPR135W	MET10	P39692	1035 aa		2.94	□□□□□ -1.94
CTF4	YPR135W	YPL034W	Q03083	165 aa		2.94	□□□□□ -1.94
CTF4	YPR135W	BIO2	P32451	375 aa		2.94	□□□□□ -1.94
CTF4	YPR135W	HPC2	Q01448	625 aa		2.94	□□□□□ -1.94
CTF4	YPR135W	UTP13	Q05946	817 aa	Known RBP	2.94	□□□□□ -1.94
CTF4	YPR135W	YPQ2	Q06328	317 aa		2.94	□□□□□ -1.94
CTF4	YPR135W	GLT1	Q12680	2145 aa	Known RBP	2.93	□□□□□ -1.94
CTF4	YPR135W	SWI5	P08153	709 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	MSC7	P38694	644 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	ALD2	P47771	506 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	TFB3	Q03290	321 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	STU1	P38198	1513 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	LEU1	P07264	779 aa	Known RBP	2.93	□□□□□ -1.94
CTF4	YPR135W	YNL165W	P53891	406 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	MAK10	Q02197	733 aa		2.93	□□□□□ -1.94
CTF4	YPR135W	TY1B-NL2	Q99337	1749 aa	Known RBP	2.92	□□□□□ -1.94
CTF4	YPR135W	BNR1	P40450	1375 aa		2.92	□□□□□ -1.94
CTF4	YPR135W	YPP1	P46951	817 aa		2.92	□□□□□ -1.94
CTF4	YPR135W	RGP1	P16664	663 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	PKC1	P24583	1151 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	AIM9	P40053	627 aa	Known RBP	2.91	□□□□□ -1.94
CTF4	YPR135W	YNL108C	P53929	270 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	ENO2	P00925	437 aa	Known RBP	2.91	□□□□□ -1.94
CTF4	YPR135W	OMA1	P36163	345 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	BRL1	P38770	471 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	YTA6	P40328	754 aa		2.91	□□□□□ -1.94
CTF4	YPR135W	RPS6A	P0CX37	236 aa	Known RBP	2.9	□□□□□ -1.94
CTF4	YPR135W	RPS6B	P0CX38	236 aa	Predicted RBP	2.9	□□□□□ -1.94
CTF4	YPR135W	TPS3	P38426	1054 aa	Known RBP	2.9	□□□□□ -1.94
CTF4	YPR135W	YTA7	P40340	1379 aa		2.9	□□□□□ -1.94
CTF4	YPR135W	PGM2	P37012	569 aa	Known RBP	2.9	□□□□□ -1.95
CTF4	YPR135W	ALG14	P38242	237 aa		2.9	□□□□□ -1.95
CTF4	YPR135W	YSP2	Q06681	1438 aa		2.9	□□□□□ -1.95
CTF4	YPR135W	MLF3	P32047	452 aa		2.89	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 111 ms