RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 ARHGEF28Q8N1W1 1705 aaKnown RBP18.76■□□□□ 0.59
GTF3A-209ENST00000640289 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.75■□□□□ 0.59
GTF3A-209ENST00000640289 MINK1Q8N4C8 1332 aaPredicted RBP18.74■□□□□ 0.59
GTF3A-209ENST00000640289 HIRIP3Q9BW71 556 aaPredicted RBP18.73■□□□□ 0.59
GTF3A-209ENST00000640289 CENPJQ9HC77 1338 aaPredicted RBP18.73■□□□□ 0.59
GTF3A-209ENST00000640289 TOM1O60784 492 aa18.72■□□□□ 0.59
GTF3A-209ENST00000640289 ATF3P18847 181 aa18.72■□□□□ 0.59
GTF3A-209ENST00000640289 CADPS2Q86UW7 1296 aa18.71■□□□□ 0.59
GTF3A-209ENST00000640289 DCCP43146 1447 aa18.71■□□□□ 0.59
GTF3A-209ENST00000640289 EIF3AQ14152 1382 aaKnown RBP18.7■□□□□ 0.58
GTF3A-209ENST00000640289 PIP4K2BP78356 416 aa18.7■□□□□ 0.58
GTF3A-209ENST00000640289 CDC42BPGQ6DT37 1551 aa18.68■□□□□ 0.58
GTF3A-209ENST00000640289 NUTM2FA1L443 756 aa18.68■□□□□ 0.58
GTF3A-209ENST00000640289 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
GTF3A-209ENST00000640289 SCAF1Q9H7N4 1312 aaKnown RBP18.68■□□□□ 0.58
GTF3A-209ENST00000640289 MST1RQ04912 1400 aa18.67■□□□□ 0.58
GTF3A-209ENST00000640289 FBXO41Q8TF61 875 aa18.67■□□□□ 0.58
GTF3A-209ENST00000640289 USP47Q96K76 1375 aa18.67■□□□□ 0.58
GTF3A-209ENST00000640289 ADGRB2O60241 1585 aa18.66■□□□□ 0.58
GTF3A-209ENST00000640289 ST20-MTHFSA0A0A6YYL1 179 aa18.65■□□□□ 0.58
GTF3A-209ENST00000640289 WASLO00401 505 aaPredicted RBP18.65■□□□□ 0.58
GTF3A-209ENST00000640289 C1orf167Q5SNV9 1468 aa18.65■□□□□ 0.58
GTF3A-209ENST00000640289 QRICH2Q9H0J4 1663 aa18.64■□□□□ 0.57
GTF3A-209ENST00000640289 CDK19Q9BWU1 502 aa18.62■□□□□ 0.57
GTF3A-209ENST00000640289 FMN2Q9NZ56 1722 aa18.61■□□□□ 0.57
GTF3A-209ENST00000640289 TULP4Q9NRJ4 1543 aa18.61■□□□□ 0.57
GTF3A-209ENST00000640289 TESK2Q96S53 571 aa18.61■□□□□ 0.57
GTF3A-209ENST00000640289 ORAI2Q96SN7 254 aa18.61■□□□□ 0.57
GTF3A-209ENST00000640289 SBNO2Q9Y2G9 1366 aa18.6■□□□□ 0.57
GTF3A-209ENST00000640289 PRR36Q9H6K5 1346 aa18.6■□□□□ 0.57
GTF3A-209ENST00000640289 BRINP3Q76B58 766 aa18.6■□□□□ 0.57
GTF3A-209ENST00000640289 HSPA5P11021 654 aaKnown RBP18.59■□□□□ 0.57
GTF3A-209ENST00000640289 CABP2Q9NPB3 220 aa18.59■□□□□ 0.57
GTF3A-209ENST00000640289 EVC2Q86UK5 1308 aa18.58■□□□□ 0.57
GTF3A-209ENST00000640289 ROBO1Q9Y6N7 1651 aa18.58■□□□□ 0.57
GTF3A-209ENST00000640289 EIF4G2P78344 907 aaKnown RBP eCLIP18.58■□□□□ 0.56
GTF3A-209ENST00000640289 SRPK2P78362 688 aaKnown RBP18.58■□□□□ 0.56
GTF3A-209ENST00000640289 ESCO1Q5FWF5 840 aa18.58■□□□□ 0.56
GTF3A-209ENST00000640289 USP32Q8NFA0 1604 aa18.57■□□□□ 0.56
GTF3A-209ENST00000640289 ANKARQ7Z5J8 1434 aa18.57■□□□□ 0.56
GTF3A-209ENST00000640289 ILDR1Q86SU0 546 aaPredicted RBP18.56■□□□□ 0.56
GTF3A-209ENST00000640289 NUDT16Q96DE0 195 aaKnown RBP18.56■□□□□ 0.56
GTF3A-209ENST00000640289 ATP7BP35670 1465 aa18.56■□□□□ 0.56
GTF3A-209ENST00000640289 DDX17Q92841 729 aaKnown RBP18.55■□□□□ 0.56
GTF3A-209ENST00000640289 ZEB1P37275 1124 aaPredicted RBP18.54■□□□□ 0.56
GTF3A-209ENST00000640289 HSPA1LP34931 641 aa18.53■□□□□ 0.56
GTF3A-209ENST00000640289 PMFBP1Q8TBY8 1022 aa18.53■□□□□ 0.56
GTF3A-209ENST00000640289 PHF8Q9UPP1 1060 aa18.53■□□□□ 0.56
GTF3A-209ENST00000640289 DISP3Q9P2K9 1392 aa18.53■□□□□ 0.56
GTF3A-209ENST00000640289 RGPD8O14715 1765 aaPredicted RBP18.5■□□□□ 0.55
GTF3A-209ENST00000640289 FOXO3O43524 673 aa18.5■□□□□ 0.55
GTF3A-209ENST00000640289 TMF1P82094 1093 aa18.5■□□□□ 0.55
GTF3A-209ENST00000640289 CCDC61Q9Y6R9 512 aa18.5■□□□□ 0.55
GTF3A-209ENST00000640289 PPIP5K1Q6PFW1 1433 aa18.49■□□□□ 0.55
GTF3A-209ENST00000640289 SLC24A1O60721 1099 aa18.48■□□□□ 0.55
GTF3A-209ENST00000640289 XPCQ01831 940 aaPredicted RBP18.48■□□□□ 0.55
GTF3A-209ENST00000640289 CABP1Q9NZU7 370 aa18.48■□□□□ 0.55
GTF3A-209ENST00000640289 AHDC1Q5TGY3 1603 aaPredicted RBP18.48■□□□□ 0.55
GTF3A-209ENST00000640289 TOPAZ1Q8N9V7 1692 aa18.47■□□□□ 0.55
GTF3A-209ENST00000640289 ATAD2Q6PL18 1390 aa18.47■□□□□ 0.55
GTF3A-209ENST00000640289 NHSL1Q5SYE7 1610 aa18.46■□□□□ 0.55
GTF3A-209ENST00000640289 PLEKHG3A1L390 1219 aa18.46■□□□□ 0.55
GTF3A-209ENST00000640289 KIF1AQ12756 1690 aa18.46■□□□□ 0.55
GTF3A-209ENST00000640289 NPHP3Q7Z494 1330 aa18.46■□□□□ 0.55
GTF3A-209ENST00000640289 NGDNQ8NEJ9 315 aaKnown RBP18.45■□□□□ 0.54
GTF3A-209ENST00000640289 ACEP12821 1306 aa18.45■□□□□ 0.54
GTF3A-209ENST00000640289 PHLPP1O60346 1717 aa18.44■□□□□ 0.54
GTF3A-209ENST00000640289 C11orf95C9JLR9 678 aaPredicted RBP18.44■□□□□ 0.54
GTF3A-209ENST00000640289 KRT28Q7Z3Y7 464 aa18.44■□□□□ 0.54
GTF3A-209ENST00000640289 PUS7Q96PZ0 661 aaKnown RBP18.44■□□□□ 0.54
GTF3A-209ENST00000640289 PXDNQ92626 1479 aa18.44■□□□□ 0.54
GTF3A-209ENST00000640289 SOS2Q07890 1332 aaPredicted RBP18.44■□□□□ 0.54
GTF3A-209ENST00000640289 ITSN1Q15811 1721 aa18.43■□□□□ 0.54
GTF3A-209ENST00000640289 COL16A1Q07092 1604 aaPredicted RBP18.43■□□□□ 0.54
GTF3A-209ENST00000640289 TMC1Q8TDI8 760 aa18.43■□□□□ 0.54
GTF3A-209ENST00000640289 POLR3AO14802 1390 aaPredicted RBP18.42■□□□□ 0.54
GTF3A-209ENST00000640289 PSME1Q06323 249 aa18.42■□□□□ 0.54
GTF3A-209ENST00000640289 POLR3GLQ9BT43 218 aa18.42■□□□□ 0.54
GTF3A-209ENST00000640289 SLC12A5Q9H2X9 1139 aa18.42■□□□□ 0.54
GTF3A-209ENST00000640289 CDCA8Q53HL2 280 aa18.41■□□□□ 0.54
GTF3A-209ENST00000640289 LRRC59Q96AG4 307 aaKnown RBP18.39■□□□□ 0.53
GTF3A-209ENST00000640289 CD163L1Q9NR16 1453 aa18.38■□□□□ 0.53
GTF3A-209ENST00000640289 CPSF1Q10570 1443 aaKnown RBP18.36■□□□□ 0.53
GTF3A-209ENST00000640289 KIF7Q2M1P5 1343 aa18.36■□□□□ 0.53
GTF3A-209ENST00000640289 SPATA31A3Q5VYP0 1347 aa18.36■□□□□ 0.53
GTF3A-209ENST00000640289 USP6P35125 1406 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 TNS3Q68CZ2 1445 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 A0A1W2PP64 1363 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 SBNO1A3KN83 1393 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 PNPLA6Q8IY17 1366 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 JCADQ9P266 1359 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 NINLQ9Y2I6 1382 aa18.35■□□□□ 0.53
GTF3A-209ENST00000640289 PAK3O75914 559 aaPredicted RBP18.35■□□□□ 0.53
GTF3A-209ENST00000640289 LMOD2Q6P5Q4 547 aa18.34■□□□□ 0.53
GTF3A-209ENST00000640289 HDGFL2Q7Z4V5 671 aaPredicted RBP18.34■□□□□ 0.53
GTF3A-209ENST00000640289 KTN1Q86UP2 1357 aaKnown RBP18.33■□□□□ 0.53
GTF3A-209ENST00000640289 TRPM3Q9HCF6 1732 aaPredicted RBP18.33■□□□□ 0.52
GTF3A-209ENST00000640289 ZNF692Q9BU19 519 aaPredicted RBP18.33■□□□□ 0.52
GTF3A-209ENST00000640289 TERF2IPQ9NYB0 399 aa18.33■□□□□ 0.52
GTF3A-209ENST00000640289 MYOM1P52179 1685 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms