RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 GTF3C3Q9Y5Q9 886 aa24.11■■□□□ 1.45
CLN3-256ENST00000637107 FAM135BQ49AJ0 1406 aa24.11■■□□□ 1.45
CLN3-256ENST00000637107 SIRT1Q96EB6 747 aa24.1■■□□□ 1.45
CLN3-256ENST00000637107 HSPA5P11021 654 aaKnown RBP24.09■■□□□ 1.45
CLN3-256ENST00000637107 POGKQ9P215 609 aa24.09■■□□□ 1.45
CLN3-256ENST00000637107 NALCNQ8IZF0 1738 aa24.08■■□□□ 1.45
CLN3-256ENST00000637107 NCOA3Q9Y6Q9 1424 aa24.08■■□□□ 1.45
CLN3-256ENST00000637107 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.08■■□□□ 1.44
CLN3-256ENST00000637107 EIF4G2P78344 907 aaKnown RBP eCLIP24.06■■□□□ 1.441e-9■■■■□ 22.4
CLN3-256ENST00000637107 IQSEC2Q5JU85 1478 aa24.05■■□□□ 1.44
CLN3-256ENST00000637107 C19orf44Q9H6X5 657 aa24.05■■□□□ 1.44
CLN3-256ENST00000637107 ADGRL3Q9HAR2 1447 aa24.05■■□□□ 1.44
CLN3-256ENST00000637107 MSH6P52701 1360 aa24.04■■□□□ 1.44
CLN3-256ENST00000637107 MINK1Q8N4C8 1332 aaPredicted RBP24.02■■□□□ 1.43
CLN3-256ENST00000637107 CENPJQ9HC77 1338 aaPredicted RBP24.01■■□□□ 1.43
CLN3-256ENST00000637107 EIF3AQ14152 1382 aaKnown RBP23.99■■□□□ 1.43
CLN3-256ENST00000637107 QRICH2Q9H0J4 1663 aa23.98■■□□□ 1.43
CLN3-256ENST00000637107 USP47Q96K76 1375 aa23.98■■□□□ 1.43
CLN3-256ENST00000637107 ANP32CO43423 234 aa23.98■■□□□ 1.43
CLN3-256ENST00000637107 ATF3P18847 181 aa23.98■■□□□ 1.43
CLN3-256ENST00000637107 UBAP1LF5GYI3 381 aa23.97■■□□□ 1.43
CLN3-256ENST00000637107 DCCP43146 1447 aa23.96■■□□□ 1.43
CLN3-256ENST00000637107 WASHC2AQ641Q2 1341 aa23.96■■□□□ 1.43
CLN3-256ENST00000637107 ST20-MTHFSA0A0A6YYL1 179 aa23.96■■□□□ 1.43
CLN3-256ENST00000637107 CADPS2Q86UW7 1296 aa23.96■■□□□ 1.43
CLN3-256ENST00000637107 TOM1O60784 492 aa23.94■■□□□ 1.42
CLN3-256ENST00000637107 CDC42BPGQ6DT37 1551 aa23.94■■□□□ 1.42
CLN3-256ENST00000637107 CCER2I3L3R5 266 aa23.94■■□□□ 1.42
CLN3-256ENST00000637107 ADGRB2O60241 1585 aa23.94■■□□□ 1.42
CLN3-256ENST00000637107 NUTM2FA1L443 756 aa23.93■■□□□ 1.42
CLN3-256ENST00000637107 SLAIN2Q9P270 581 aa23.92■■□□□ 1.42
CLN3-256ENST00000637107 MST1RQ04912 1400 aa23.91■■□□□ 1.42
CLN3-256ENST00000637107 PIP4K2BP78356 416 aa23.9■■□□□ 1.42
CLN3-256ENST00000637107 WASLO00401 505 aaPredicted RBP23.9■■□□□ 1.42
CLN3-256ENST00000637107 FMN2Q9NZ56 1722 aa23.89■■□□□ 1.41
CLN3-256ENST00000637107 TESK2Q96S53 571 aa23.88■■□□□ 1.41
CLN3-256ENST00000637107 CDK19Q9BWU1 502 aa23.88■■□□□ 1.41
CLN3-256ENST00000637107 TULP4Q9NRJ4 1543 aa23.87■■□□□ 1.41
CLN3-256ENST00000637107 C1orf167Q5SNV9 1468 aa23.86■■□□□ 1.41
CLN3-256ENST00000637107 CCDC7Q96M83 1385 aa23.86■■□□□ 1.41
CLN3-256ENST00000637107 SBNO2Q9Y2G9 1366 aa23.86■■□□□ 1.41
CLN3-256ENST00000637107 RGPD8O14715 1765 aaPredicted RBP23.86■■□□□ 1.41
CLN3-256ENST00000637107 C11orf95C9JLR9 678 aaPredicted RBP23.86■■□□□ 1.41
CLN3-256ENST00000637107 USP32Q8NFA0 1604 aa23.84■■□□□ 1.41
CLN3-256ENST00000637107 ORAI2Q96SN7 254 aa23.84■■□□□ 1.41
CLN3-256ENST00000637107 CABP2Q9NPB3 220 aa23.84■■□□□ 1.41
CLN3-256ENST00000637107 EVC2Q86UK5 1308 aa23.83■■□□□ 1.41
CLN3-256ENST00000637107 PRR36Q9H6K5 1346 aa23.83■■□□□ 1.41
CLN3-256ENST00000637107 SRPK2P78362 688 aaKnown RBP23.82■■□□□ 1.4
CLN3-256ENST00000637107 FBXO41Q8TF61 875 aa23.82■■□□□ 1.4
CLN3-256ENST00000637107 ROBO1Q9Y6N7 1651 aa23.82■■□□□ 1.4
CLN3-256ENST00000637107 BRINP3Q76B58 766 aa23.81■■□□□ 1.4
CLN3-256ENST00000637107 ESCO1Q5FWF5 840 aa23.8■■□□□ 1.4
CLN3-256ENST00000637107 NUDT16Q96DE0 195 aaKnown RBP23.79■■□□□ 1.4
CLN3-256ENST00000637107 ATP7BP35670 1465 aa23.79■■□□□ 1.4
CLN3-256ENST00000637107 ANKARQ7Z5J8 1434 aa23.78■■□□□ 1.4
CLN3-256ENST00000637107 DISP3Q9P2K9 1392 aa23.77■■□□□ 1.4
CLN3-256ENST00000637107 KIF7Q2M1P5 1343 aa23.76■■□□□ 1.39
CLN3-256ENST00000637107 DDX17Q92841 729 aaKnown RBP23.76■■□□□ 1.39
CLN3-256ENST00000637107 TMF1P82094 1093 aa23.75■■□□□ 1.39
CLN3-256ENST00000637107 PMFBP1Q8TBY8 1022 aa23.74■■□□□ 1.39
CLN3-256ENST00000637107 CCDC61Q9Y6R9 512 aa23.74■■□□□ 1.39
CLN3-256ENST00000637107 SLC24A1O60721 1099 aa23.73■■□□□ 1.39
CLN3-256ENST00000637107 PHF8Q9UPP1 1060 aa23.72■■□□□ 1.39
CLN3-256ENST00000637107 TOPAZ1Q8N9V7 1692 aa23.72■■□□□ 1.39
CLN3-256ENST00000637107 FOXO3O43524 673 aa23.71■■□□□ 1.39
CLN3-256ENST00000637107 ITSN1Q15811 1721 aa23.71■■□□□ 1.39
CLN3-256ENST00000637107 PPIP5K1Q6PFW1 1433 aa23.7■■□□□ 1.38
CLN3-256ENST00000637107 CABP1Q9NZU7 370 aa23.69■■□□□ 1.38
CLN3-256ENST00000637107 ATAD2Q6PL18 1390 aa23.69■■□□□ 1.38
CLN3-256ENST00000637107 KIF1AQ12756 1690 aa23.68■■□□□ 1.38
CLN3-256ENST00000637107 HSPA1LP34931 641 aa23.68■■□□□ 1.38
CLN3-256ENST00000637107 NHSL1Q5SYE7 1610 aa23.68■■□□□ 1.38
CLN3-256ENST00000637107 XPCQ01831 940 aaPredicted RBP23.67■■□□□ 1.38
CLN3-256ENST00000637107 PUS7Q96PZ0 661 aaKnown RBP23.67■■□□□ 1.38
CLN3-256ENST00000637107 PLEKHG3A1L390 1219 aa23.66■■□□□ 1.38
CLN3-256ENST00000637107 ILDR1Q86SU0 546 aaPredicted RBP23.66■■□□□ 1.38
CLN3-256ENST00000637107 AHDC1Q5TGY3 1603 aaPredicted RBP23.66■■□□□ 1.38
CLN3-256ENST00000637107 PHLPP1O60346 1717 aa23.66■■□□□ 1.38
CLN3-256ENST00000637107 NGDNQ8NEJ9 315 aaKnown RBP23.65■■□□□ 1.38
CLN3-256ENST00000637107 ACEP12821 1306 aa23.65■■□□□ 1.38
CLN3-256ENST00000637107 TMC1Q8TDI8 760 aa23.65■■□□□ 1.38
CLN3-256ENST00000637107 SLC12A5Q9H2X9 1139 aa23.65■■□□□ 1.38
CLN3-256ENST00000637107 NPHP3Q7Z494 1330 aa23.64■■□□□ 1.37
CLN3-256ENST00000637107 CDCA8Q53HL2 280 aa23.64■■□□□ 1.37
CLN3-256ENST00000637107 POLR3GLQ9BT43 218 aa23.64■■□□□ 1.37
CLN3-256ENST00000637107 POLR3AO14802 1390 aaPredicted RBP23.61■■□□□ 1.37
CLN3-256ENST00000637107 SOS2Q07890 1332 aaPredicted RBP23.61■■□□□ 1.37
CLN3-256ENST00000637107 PSME1Q06323 249 aa23.61■■□□□ 1.37
CLN3-256ENST00000637107 PXDNQ92626 1479 aa23.61■■□□□ 1.37
CLN3-256ENST00000637107 COL16A1Q07092 1604 aaPredicted RBP23.61■■□□□ 1.37
CLN3-256ENST00000637107 KRT28Q7Z3Y7 464 aa23.61■■□□□ 1.37
CLN3-256ENST00000637107 PRKRIP1Q9H875 184 aaPredicted RBP23.61■■□□□ 1.37
CLN3-256ENST00000637107 CD163L1Q9NR16 1453 aa23.58■■□□□ 1.36
CLN3-256ENST00000637107 MYOM1P52179 1685 aa23.57■■□□□ 1.36
CLN3-256ENST00000637107 CPSF1Q10570 1443 aaKnown RBP23.56■■□□□ 1.36
CLN3-256ENST00000637107 AKAP12Q02952 1782 aa23.55■■□□□ 1.36
CLN3-256ENST00000637107 NINLQ9Y2I6 1382 aa23.55■■□□□ 1.36
CLN3-256ENST00000637107 LRRC59Q96AG4 307 aaKnown RBP23.54■■□□□ 1.36
CLN3-256ENST00000637107 TRPM3Q9HCF6 1732 aaPredicted RBP23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms