RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 WAPLQ7Z5K2 1190 aa19.6■□□□□ 0.73
CLN3-242ENST00000635958 PUS7Q96PZ0 661 aaKnown RBP19.6■□□□□ 0.73
CLN3-242ENST00000635958 PTCH1Q13635 1447 aa19.6■□□□□ 0.73
CLN3-242ENST00000635958 CHD2O14647 1828 aaKnown RBP19.6■□□□□ 0.73
CLN3-242ENST00000635958 XRN1Q8IZH2 1706 aaKnown RBP19.6■□□□□ 0.73
CLN3-242ENST00000635958 STRCQ7RTU9 1775 aa19.59■□□□□ 0.73
CLN3-242ENST00000635958 PLEKHH1Q9ULM0 1364 aa19.59■□□□□ 0.73
CLN3-242ENST00000635958 EVC2Q86UK5 1308 aa19.57■□□□□ 0.72
CLN3-242ENST00000635958 KCNA6P17658 529 aa19.57■□□□□ 0.72
CLN3-242ENST00000635958 SAFB2Q14151 953 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLN3-242ENST00000635958 TULP4Q9NRJ4 1543 aa19.54■□□□□ 0.72
CLN3-242ENST00000635958 MINK1Q8N4C8 1332 aaPredicted RBP19.54■□□□□ 0.72
CLN3-242ENST00000635958 MYT1Q01538 1121 aa19.53■□□□□ 0.72
CLN3-242ENST00000635958 NWD1Q149M9 1564 aa19.53■□□□□ 0.72
CLN3-242ENST00000635958 POLR3GLQ9BT43 218 aa19.53■□□□□ 0.72
CLN3-242ENST00000635958 DMRT2Q9Y5R5 561 aa19.52■□□□□ 0.72
CLN3-242ENST00000635958 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.5■□□□□ 0.71
CLN3-242ENST00000635958 WASLO00401 505 aaPredicted RBP19.49■□□□□ 0.71
CLN3-242ENST00000635958 CDK19Q9BWU1 502 aa19.49■□□□□ 0.71
CLN3-242ENST00000635958 ADGRB2O60241 1585 aa19.49■□□□□ 0.71
CLN3-242ENST00000635958 CABP2Q9NPB3 220 aa19.47■□□□□ 0.71
CLN3-242ENST00000635958 NKTRP30414 1462 aaKnown RBP19.47■□□□□ 0.71
CLN3-242ENST00000635958 MIER1Q8N108 512 aa19.46■□□□□ 0.71
CLN3-242ENST00000635958 ATAD2Q6PL18 1390 aa19.46■□□□□ 0.71
CLN3-242ENST00000635958 SRPK2P78362 688 aaKnown RBP19.46■□□□□ 0.71
CLN3-242ENST00000635958 FBXO41Q8TF61 875 aa19.45■□□□□ 0.7
CLN3-242ENST00000635958 MYOM1P52179 1685 aa19.45■□□□□ 0.7
CLN3-242ENST00000635958 NINLQ9Y2I6 1382 aa19.44■□□□□ 0.7
CLN3-242ENST00000635958 PER1O15534 1290 aaPredicted RBP19.44■□□□□ 0.7
CLN3-242ENST00000635958 PANK3Q9H999 370 aa19.44■□□□□ 0.7
CLN3-242ENST00000635958 STRCP1A6NGW2 1772 aa19.42■□□□□ 0.7
CLN3-242ENST00000635958 NCOA3Q9Y6Q9 1424 aa19.42■□□□□ 0.7
CLN3-242ENST00000635958 PROSER2Q86WR7 435 aaPredicted RBP19.41■□□□□ 0.7
CLN3-242ENST00000635958 CERKQ8TCT0 537 aa19.41■□□□□ 0.7
CLN3-242ENST00000635958 SLC12A5Q9H2X9 1139 aa19.41■□□□□ 0.7
CLN3-242ENST00000635958 ADGRL3Q9HAR2 1447 aa19.4■□□□□ 0.7
CLN3-242ENST00000635958 NUDT16Q96DE0 195 aaKnown RBP19.39■□□□□ 0.7
CLN3-242ENST00000635958 TMC1Q8TDI8 760 aa19.39■□□□□ 0.69
CLN3-242ENST00000635958 CCDC61Q9Y6R9 512 aa19.39■□□□□ 0.69
CLN3-242ENST00000635958 CDC42BPGQ6DT37 1551 aa19.37■□□□□ 0.69
CLN3-242ENST00000635958 NALCNQ8IZF0 1738 aa19.37■□□□□ 0.69
CLN3-242ENST00000635958 PRR36Q9H6K5 1346 aa19.37■□□□□ 0.69
CLN3-242ENST00000635958 ATP7BP35670 1465 aa19.37■□□□□ 0.69
CLN3-242ENST00000635958 ANKRD36BQ8N2N9 1353 aa19.36■□□□□ 0.69
CLN3-242ENST00000635958 ANP32CO43423 234 aa19.36■□□□□ 0.69
CLN3-242ENST00000635958 RBM33Q96EV2 1170 aaKnown RBP19.36■□□□□ 0.69
CLN3-242ENST00000635958 CABP1Q9NZU7 370 aa19.36■□□□□ 0.69
CLN3-242ENST00000635958 LTBP4Q8N2S1 1624 aa19.36■□□□□ 0.69
CLN3-242ENST00000635958 ZNF335Q9H4Z2 1342 aaPredicted RBP19.35■□□□□ 0.69
CLN3-242ENST00000635958 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
CLN3-242ENST00000635958 TMEM94Q12767 1356 aa19.35■□□□□ 0.69
CLN3-242ENST00000635958 ANKARQ7Z5J8 1434 aa19.35■□□□□ 0.69
CLN3-242ENST00000635958 C19orf44Q9H6X5 657 aa19.35■□□□□ 0.69
CLN3-242ENST00000635958 TERF2IPQ9NYB0 399 aa19.34■□□□□ 0.69
CLN3-242ENST00000635958 PLEKHG3A1L390 1219 aa19.33■□□□□ 0.69
CLN3-242ENST00000635958 CD163L1Q9NR16 1453 aa19.33■□□□□ 0.69
CLN3-242ENST00000635958 FMN2Q9NZ56 1722 aa19.33■□□□□ 0.68
CLN3-242ENST00000635958 PPIP5K1Q6PFW1 1433 aa19.33■□□□□ 0.68
CLN3-242ENST00000635958 KNSTRNQ9Y448 316 aa19.32■□□□□ 0.68
CLN3-242ENST00000635958 NPC1L1Q9UHC9 1359 aa19.32■□□□□ 0.68
CLN3-242ENST00000635958 PRKRIP1Q9H875 184 aaPredicted RBP19.32■□□□□ 0.68
CLN3-242ENST00000635958 USP32Q8NFA0 1604 aa19.32■□□□□ 0.68
CLN3-242ENST00000635958 LRRC7Q96NW7 1537 aa19.32■□□□□ 0.68
CLN3-242ENST00000635958 AMER1Q5JTC6 1135 aaPredicted RBP19.31■□□□□ 0.68
CLN3-242ENST00000635958 C14orf37Q86TY3 774 aa19.31■□□□□ 0.68
CLN3-242ENST00000635958 TOPAZ1Q8N9V7 1692 aa19.31■□□□□ 0.68
CLN3-242ENST00000635958 CPSF1Q10570 1443 aaKnown RBP19.31■□□□□ 0.68
CLN3-242ENST00000635958 A0A1W2PP64 1363 aa19.31■□□□□ 0.68
CLN3-242ENST00000635958 DCCP43146 1447 aa19.3■□□□□ 0.68
CLN3-242ENST00000635958 HDGFL2Q7Z4V5 671 aaPredicted RBP19.3■□□□□ 0.68
CLN3-242ENST00000635958 KTN1Q86UP2 1357 aaKnown RBP19.29■□□□□ 0.68
CLN3-242ENST00000635958 NUTM2FA1L443 756 aa19.28■□□□□ 0.68
CLN3-242ENST00000635958 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
CLN3-242ENST00000635958 ZNF692Q9BU19 519 aaPredicted RBP19.28■□□□□ 0.68
CLN3-242ENST00000635958 XIRP1Q702N8 1843 aaKnown RBP19.27■□□□□ 0.68
CLN3-242ENST00000635958 NSD3Q9BZ95 1437 aa19.27■□□□□ 0.68
CLN3-242ENST00000635958 ITSN1Q15811 1721 aa19.27■□□□□ 0.67
CLN3-242ENST00000635958 RALBP1Q15311 655 aa19.26■□□□□ 0.67
CLN3-242ENST00000635958 IQSEC2Q5JU85 1478 aa19.26■□□□□ 0.67
CLN3-242ENST00000635958 RGPD8O14715 1765 aaPredicted RBP19.26■□□□□ 0.67
CLN3-242ENST00000635958 POLR3AO14802 1390 aaPredicted RBP19.25■□□□□ 0.67
CLN3-242ENST00000635958 MSH6P52701 1360 aa19.25■□□□□ 0.67
CLN3-242ENST00000635958 PARD3Q8TEW0 1356 aa19.25■□□□□ 0.67
CLN3-242ENST00000635958 CCER2I3L3R5 266 aa19.24■□□□□ 0.67
CLN3-242ENST00000635958 ACEP12821 1306 aa19.24■□□□□ 0.67
CLN3-242ENST00000635958 ATF3P18847 181 aa19.24■□□□□ 0.67
CLN3-242ENST00000635958 CADPS2Q86UW7 1296 aa19.24■□□□□ 0.67
CLN3-242ENST00000635958 CGNL1Q0VF96 1302 aa19.23■□□□□ 0.67
CLN3-242ENST00000635958 AKAP12Q02952 1782 aa19.23■□□□□ 0.67
CLN3-242ENST00000635958 EDC4Q6P2E9 1401 aaKnown RBP19.22■□□□□ 0.67
CLN3-242ENST00000635958 CC2D1BQ5T0F9 858 aaKnown RBP19.22■□□□□ 0.67
CLN3-242ENST00000635958 PHF8Q9UPP1 1060 aa19.21■□□□□ 0.67
CLN3-242ENST00000635958 C1orf167Q5SNV9 1468 aa19.21■□□□□ 0.67
CLN3-242ENST00000635958 MST1RQ04912 1400 aa19.21■□□□□ 0.67
CLN3-242ENST00000635958 NSD2O96028 1365 aa19.21■□□□□ 0.67
CLN3-242ENST00000635958 PMFBP1Q8TBY8 1022 aa19.21■□□□□ 0.67
CLN3-242ENST00000635958 MON2Q7Z3U7 1717 aa19.2■□□□□ 0.66
CLN3-242ENST00000635958 NGDNQ8NEJ9 315 aaKnown RBP19.19■□□□□ 0.66
CLN3-242ENST00000635958 USP6P35125 1406 aa19.19■□□□□ 0.66
CLN3-242ENST00000635958 SSH2Q76I76 1423 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms